Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g1000 ATGATGTTCCATTCTCAGGGTGTGTCAAGACATTATAGTCTTCTTGCTGTCCTGAGTGGTAAATCACGTGACATTAAGCAAAAGCAGAAGCAGAGTGCTGCTTCTGAGGATCAACCTCTTTATCCCTTTCCTGAACTCTCTTCCTCGGGCCGTCTTGAGGTCAAGGTATTGATCAAACCTACGGCTGATGAACTCAGCCAAGCTCTTGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGCCAGCGGCTAGAAGATAGGGGAGAAATTGGGCCTCTTGAATGGGAAGATTTTGACCTGTCTGTCCCAGAAGCCTTGTGTGGATTGTTTTCTTCCAAATTACCTAATACTGTTTATTTGGAAACTCCTAAGGGAGAAAAATTGGCAGAGGCACTCCGTAATAAGGGAGTTCCATACACTATTTATTGGAAAAATGATTTTTCAAAGTATGCAGCTTCACATTTTAGACATTCTTTTTTCTCTGTGGCACAGAGTACATCGAGCCATACATGGGATGCTTTCCAGCTTGCTCTTGCATCTTTTAGACTATACTGTGTACAAAACAATGTCTTACCTTCCAACAGCCATAAGGGTGCTGGAAAGCTTGGGCCACAAATTCTTGGGGTTCCTCCCAACATTGATGTTAGTCCATGTATAGAAGACATTAAGGAAGAGGAAGAAGGTTCACTCGAGACTATTTCGGCTGTAAAGATATATGATGACGACGTGAACATTAGATTTCTTGTTTGTGGAGTTCCCTGCACATTGGATGCTTGTTTGTTGGGGTCATTAGAAGATGGACTCAATGCTCTTCTATTTTCAGAAATACGTGGATGCAAACTTCACAACAGGACAAGTGCTCCACCACCACCTCTCCAGGCAGGAACATTCTCACGTAGCGTGGTGACTATGCGTTGTGATATATCCACATGTAGTTCTGCTCATATATCGCTTTTGGTATCTGGAAGTGCAGACAATTGCTTTAATGATCAGGCATGGCTTTTGGAGAATCATATTAAAAAAGAGCTCATTGAGAAGAGTCAACTTGTCCAGGCATTTCCTAATCATGAACAAAGTAAATCACCTTCATCTGAGCCTCGAAGATCAGCCTCGGTAGCTTGTGGATCTAGTGTGTTTGAAGTTTTTATGCGAGTTCCTGCATGGGCTTCACAGGTTCTGAGACAGCTTGCACCCAACTTGTCATATCGCAGCCTTGTTATGTTGGGCATCGCTAGTATTCAAGGATTGCCGGTTGCATCTTTTAATAAAGATGATGCAGAACGCCTCCTTTTCTTTTGTACTACTACTAGGCAGGAGAAAGAAAACTGTCCTAACGATCTTGTTTTCTCTGGGATTCCAAGTTGGCTGAAGCCTCCACCACCCAGTCGAAAAAGATCTGAACCATGCTCTAGTTCAAAGTCTAATAATGCTAGTGTCTGGGGAATTGAATCTGAAGCTATTGGTAGTCGTAGACAGAAATTTAATCATGCTGCTATGAGACCAATCCCTCACTCTCAGAGACACAAGATTCTCCCCTTTTCTGGATTGTCTGAGGGTGCAAGATATGATGGAGACCATGGAAAATCAAATCTACCACTTGCTCCTATTAAGCATAATGTTTCAGGCCCTACTTCAGTTACAAGTAGGAAATCTGTGTCAAACTCATTTCAAGCTCACCAGATTATTTCTTTGAATCCACTACCTATGAAAAAGCATGGTTGTGACAGAGCTCCAATACGAGCTTGCTCAGAGGAGGAATTCCTGAGGGATGTAATGCAGTTTTTGATACTTCGGGGGCATAATCGTCTAATTCCACCAGGTGGACTTGCCGAGTTCCCTGATGCCATTTTGAATGCGAAACGCCTTGACCTGTTCAACTTGTATAGGGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGAAATGGTATCAATTGGAAAGGGCAAGTTTTCTCAAAGATGCGCAATCACACACTGACAAATAGAATGACAGGTGTAGGAAACACACTCAAAAGACATTACGAAACTTATCTCTTAGAGTATGAATTATCTCATGATGACGTAGATGGAGAGTGCTGCTTGATGTGTCACAGTAGTGCAGCAGGTGACTGGGTGAACTGCGGTGACTACGCTAAAACTGATGGGCTGGAGTACGTTTGTCCTCGCTGCAGCGCGTTAAAATTCAGTAAAAAATCGCAAAAAACTGCAAATGGTTATTAA 2217 0.4285 MMFHSQGVSRHYSLLAVLSGKSRDIKQKQKQSAASEDQPLYPFPELSSSGRLEVKVLIKPTADELSQALEQLQPDFVYLQGQRLEDRGEIGPLEWEDFDLSVPEALCGLFSSKLPNTVYLETPKGEKLAEALRNKGVPYTIYWKNDFSKYAASHFRHSFFSVAQSTSSHTWDAFQLALASFRLYCVQNNVLPSNSHKGAGKLGPQILGVPPNIDVSPCIEDIKEEEEGSLETISAVKIYDDDVNIRFLVCGVPCTLDACLLGSLEDGLNALLFSEIRGCKLHNRTSAPPPPLQAGTFSRSVVTMRCDISTCSSAHISLLVSGSADNCFNDQAWLLENHIKKELIEKSQLVQAFPNHEQSKSPSSEPRRSASVACGSSVFEVFMRVPAWASQVLRQLAPNLSYRSLVMLGIASIQGLPVASFNKDDAERLLFFCTTTRQEKENCPNDLVFSGIPSWLKPPPPSRKRSEPCSSSKSNNASVWGIESEAIGSRRQKFNHAAMRPIPHSQRHKILPFSGLSEGARYDGDHGKSNLPLAPIKHNVSGPTSVTSRKSVSNSFQAHQIISLNPLPMKKHGCDRAPIRACSEEEFLRDVMQFLILRGHNRLIPPGGLAEFPDAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYETYLLEYELSHDDVDGECCLMCHSSAAGDWVNCGDYAKTDGLEYVCPRCSALKFSKKSQKTANGY 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g1000 738 ProSiteProfiles ARID domain profile. 581 685 IPR001606 GO:0003677
Aed4g1000 738 SMART ARID_2 578 681 - -
Aed4g1000 738 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 707 IPR042293 -
Aed4g1000 738 MobiDBLite consensus disorder prediction 454 476 - -
Aed4g1000 738 CDD ARID 583 681 - -
Aed4g1000 738 SUPERFAMILY ARID-like 582 696 IPR036431 GO:0003677
Aed4g1000 738 Gene3D - 576 693 IPR036431 GO:0003677
Aed4g1000 738 Pfam ARID/BRIGHT DNA binding domain 584 681 IPR001606 GO:0003677
Aed4g1000 738 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 708 738 IPR042293 -
Aed4g1000 738 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 708 738 - -
Aed4g1000 738 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 707 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g1000 Aed-Chr4 9175429 9182394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g1000 2 737 ARID Transcription Factor Family AT3G43240 64.211 0.0 940
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aed4g1000 ARID 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g1000 - - gmx:100808357 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g1000 4 9175429 9182394 Aed4g1000 4 9175429 9182394 ECH