Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0999 ATGCAAATTACCGTTTTTAAAGCTTACATAATCATATTAAAAATAGCAATTCCCTTTCTTAGACAAGAGGTAGCTCGTTCACAGTTCACACTAATCCATATTCCCATACCCCATTTTCAATGCAGAGAAAATAGAAACAAGCCCCAGTTTCTACTATTGCATACCGATACCATAAACAGAGCAATCTTCAATAAACAAGCAATCTTCAAGAAAACCATTGTTCCTTTGCTTAATCACGTCACACACACACACACACACACACAAAAGAAAATGGGAAACAACCTTTGTGTCACTCAAAGAAAGGCCATAGCAAAGCCTACTCCATCACACATTTTGAAAGAAAAAAAAGCCATGATCATCCCAAAGGCTGGTAATTTGAACCTGGAAACCATCTTGGAAAACCACGTTCCCCCTAATAACGAAAACTGCGCCACAGCCCCCGTTTACACCTGCGAAATTTGCTGCGAATTCAGGCCAATCTATGACTCCTTCAGCCCTGAAGGCTGTTCCCACTTCTACTGCACCAAATGCACCCTCGGATACATTGTGTCAAAGCTCCAAAACAACGACGTTTCAAACCTTACTTGCCCCGAGTCGGGGTGCCGCGGCGAGCTGAGTCTTCTGTTCTGCGAGCCAATTCTGCCGGAAGAGGTGTTGGTGTGGTGGCAGAAGGCACTATGTGAGTCCATGATTCCCGAGAAGGACAAGTTCTACTGTCCCTTCAAGGATTGTTCTGCTTTGTTGACTCGCGAGAGTGAGAGTGTAGATGATAAAGACATCATTAGAGAATCGAAGTGTCCGATTTGCAGGAGGCTGTTCTGTGCACAATGCAGAGTGCCCTGGCACGCGGAGATAGCGTGCGAGGAGTTTCAGAAACTGAACAAGAATGAGAGGGAGAAAGAAGATATCATGCTTGTGAACCTTGCCAAGAAGAAGAAGTGGACGAGGTGCCCTGAATGTGGGGTTTACATCTCGAAATCGCACGGCTGCACCTACATGAAATGCAGGTCCACACCTTTTTTTTTTTTTTTTTTCCTTCTCCACTCTCTTGTTCATACTTGA 1062 0.4454 MQITVFKAYIIILKIAIPFLRQEVARSQFTLIHIPIPHFQCRENRNKPQFLLLHTDTINRAIFNKQAIFKKTIVPLLNHVTHTHTHTQKKMGNNLCVTQRKAIAKPTPSHILKEKKAMIIPKAGNLNLETILENHVPPNNENCATAPVYTCEICCEFRPIYDSFSPEGCSHFYCTKCTLGYIVSKLQNNDVSNLTCPESGCRGELSLLFCEPILPEEVLVWWQKALCESMIPEKDKFYCPFKDCSALLTRESESVDDKDIIRESKCPICRRLFCAQCRVPWHAEIACEEFQKLNKNEREKEDIMLVNLAKKKKWTRCPECGVYISKSHGCTYMKCRSTPFFFFFFLLHSLVHT 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0999 353 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 79 341 IPR031127 GO:0004842|GO:0016567
Aed4g0999 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 233 IPR013083 -
Aed4g0999 353 SUPERFAMILY RING/U-box 147 233 - -
Aed4g0999 353 SMART ibrneu5 220 287 IPR002867 -
Aed4g0999 353 ProSiteProfiles TRIAD supradomain profile. 147 353 IPR044066 -
Aed4g0999 353 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 79 341 - -
Aed4g0999 353 Gene3D - 284 342 - -
Aed4g0999 353 SUPERFAMILY RING/U-box 225 292 - -
Aed4g0999 353 SUPERFAMILY RING/U-box 298 335 - -
Aed4g0999 353 Pfam IBR domain, a half RING-finger domain 223 287 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0999 Aed-Chr4 9167113 9168643 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0999 150 336 C3H Transcription Factor Family AT2G19610 28.000 9.08e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0999 K11975 - dcr:108210840 240.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0999 4 9167113 9168643 Aed4g0999 4 9167113 9168643 ECH