Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed4g0998 | ATGAATCCCGAACCGCCGCCGCCGATTACGATGATTCCGCCGCCGACGCCGCTGAACCGCGAAACGACGTCGTGGAGGAAGAGCCGCAGGGCGAGGACAGACGCCACCGTTATTCCGCCTTTCGCGGAAGTCGTCGACGTGGACGCCTCCTCCTTTTTCACCACGCCGATCTCCTTCAGAGGCGCCACGAAGCCAGACGCGATCGCCGTGGAGCAACACGACGGCGTTTCAACCCCCGTCCATGTCATCAACCTCTCGGACACGGAGGACGACGACGAGGTCCGCATCCTCAGCTTCACTCCGCGTAACACCATCTTCGGAAAACGCAAAAACAAGAAAGCCAGAGGTGAGTGCTCTAACTCCAACGCCGCGCCGTTCGTCTGCGAAATCTGCACCGAAACGAAAACCGCGATCGACTCCTTCTCCATCGACGGATGCAGCCACGCGTACTGCAGCGCCTGCGTTGCGCACTACGTCGAGTCAAAGCTCGACGAAAACATCGTCAACATCACGTGCCCCGTGCCGGGATGCAGGGGATTACTCGAGGCTGAGGATTGCCGCGAGATTCTTACGGCACCGATCTTCGATCGGTGGGGAAAAGCTTTATGCGAGGCTGTGGTTTCCACCGAAGAGAAATTCTACTGTCCGTTCGCGGATTGTTCCGCTATGCTGATTTGCGGGAGTGAGGATCGTAATATCAGAGAATCGGAGTGTCCGAACTGTAGGAGACTGTTCTGCGCTCTGTGTAGGGTTCCCTGGCACCAGAACATATCCTGCAAGGAGTTTCAGAAACTGAACGCGGACGAGAGGGGGAGGGAGGATCTCATGCTGATGAACCTCGCTACGCAAATGCAGTGGAAGAGGTGCCCCGCGTGCAGGTTTTACGTCGCCAAATCCACTGGCTGCCCGTACATGAAATGCAGTCGAGTTAGAGCAGGAGATGAGTTCGTTTGA | 954 | 0.5713 | MNPEPPPPITMIPPPTPLNRETTSWRKSRRARTDATVIPPFAEVVDVDASSFFTTPISFRGATKPDAIAVEQHDGVSTPVHVINLSDTEDDDEVRILSFTPRNTIFGKRKNKKARGECSNSNAAPFVCEICTETKTAIDSFSIDGCSHAYCSACVAHYVESKLDENIVNITCPVPGCRGLLEAEDCREILTAPIFDRWGKALCEAVVSTEEKFYCPFADCSAMLICGSEDRNIRESECPNCRRLFCALCRVPWHQNISCKEFQKLNADERGREDLMLMNLATQMQWKRCPACRFYVAKSTGCPYMKCSRVRAGDEFV | 317 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed4g0998 | 317 | ProSitePatterns | Zinc finger RING-type signature. | 146 | 155 | IPR017907 | - | |
| Aed4g0998 | 317 | SMART | ibrneu5 | 196 | 259 | IPR002867 | - | |
| Aed4g0998 | 317 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Aed4g0998 | 317 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 75 | 309 | IPR031127 | GO:0004842|GO:0016567 | |
| Aed4g0998 | 317 | SUPERFAMILY | RING/U-box | 125 | 205 | - | - | |
| Aed4g0998 | 317 | Pfam | Zinc finger, C3HC4 type (RING finger) | 128 | 173 | IPR018957 | GO:0046872 | |
| Aed4g0998 | 317 | ProSiteProfiles | Zinc finger RING-type profile. | 128 | 174 | IPR001841 | - | |
| Aed4g0998 | 317 | SUPERFAMILY | RING/U-box | 270 | 308 | - | - | |
| Aed4g0998 | 317 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 75 | 309 | - | - | |
| Aed4g0998 | 317 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 210 | IPR013083 | - | |
| Aed4g0998 | 317 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Aed4g0998 | 317 | Gene3D | - | 257 | 316 | - | - | |
| Aed4g0998 | 317 | Pfam | IBR domain, a half RING-finger domain | 201 | 259 | IPR002867 | - | |
| Aed4g0998 | 317 | ProSiteProfiles | TRIAD supradomain profile. | 124 | 317 | IPR044066 | - | |
| Aed4g0998 | 317 | SUPERFAMILY | RING/U-box | 202 | 264 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed4g0998 | Aed-Chr4 | 9159370 | 9162188 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed4g0998 | 128 | 307 | C3H Transcription Factor Family | AT2G19610 | 28.723 | 1.44e-17 | 80.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed4g0998 | K11975 | - | gmx:100803898 | 469.159 |