Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0997 ATGGGTAACCAACTTTGTGTCATTGCGAAGAAGACTAAAAGAAAAGCCACCACAACAAAACCCACTACTACACCACCACCACCACCATTATCCACATTGAACCTAGAAACCAATTTGCAAAACTACACCCCCCCAAATAACACAAATTACAACAGCACCCCATCTTATACCTGCGAATTTTGCTGCGAACCGAGGCCGATATACGACTCCTTCAGCCCCGAAGGTTGCTGCCACTTCTACTGCACCAAATGCACTCTTAGATACATAGTTTCGAAGCTTCAAAACAACGCTTTGAACCTCACTTGCCCCGAGTCAGCGTGCGGCGGAAAGCTGACTCCGCATTCCTGCAAACAGATTCTACCGAACTACGTGCTGGTGTGGTGGGAGAGGGCGCTTTGCGAGTCCGTGATTCCCGAGAAGGACAAGTTTTACTGTCCGTTCAACGATTGCTCGGCGCTGTTGTTGTTGTGCAGTACTCACAGTGAGAATTCTTCGAAGCTGCCGCCGCCTCCGACGCGGCGGCGTCGTCGTCTTCGTCGAAAGAAGAATGGTGGTGTGGTGAATAGTATTAGAGCTGCGAATTGCCCTCACTGCAAGAGGAATGTGTGCGTGCAGTGCAGGGCGCCGTGGCATTCCGAGATTAGCTGCAAGAAATTTCAGAGGCTGAAGAACAGGAACGACGATCTCATGCTGGATCTTGCCAAGAGGAAAAAATGGAGACGATGCCCTAACTGCAAGCATTATGTTGAGAAGAAACAAGGCTGCGATGACATGACATGCAGGTGTTTTCATAGATTTTGTTACAACTGTGGAGCTAGCATATACAACCATGTTGGCCATGATTGCTTTGAACTTGATGACTAA 864 0.4861 MGNQLCVIAKKTKRKATTTKPTTTPPPPPLSTLNLETNLQNYTPPNNTNYNSTPSYTCEFCCEPRPIYDSFSPEGCCHFYCTKCTLRYIVSKLQNNALNLTCPESACGGKLTPHSCKQILPNYVLVWWERALCESVIPEKDKFYCPFNDCSALLLLCSTHSENSSKLPPPPTRRRRRLRRKKNGGVVNSIRAANCPHCKRNVCVQCRAPWHSEISCKKFQRLKNRNDDLMLDLAKRKKWRRCPNCKHYVEKKQGCDDMTCRCFHRFCYNCGASIYNHVGHDCFELDD 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0997 287 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 141 IPR013083 -
Aed4g0997 287 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 47 158 IPR031127 GO:0004842|GO:0016567
Aed4g0997 287 Gene3D - 214 287 - -
Aed4g0997 287 ProSiteProfiles TRIAD supradomain profile. 54 286 IPR044066 -
Aed4g0997 287 MobiDBLite consensus disorder prediction 161 183 - -
Aed4g0997 287 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 47 158 - -
Aed4g0997 287 Pfam IBR domain, a half RING-finger domain 134 216 IPR002867 -
Aed4g0997 287 Pfam IBR domain, a half RING-finger domain 232 282 IPR002867 -
Aed4g0997 287 SUPERFAMILY RING/U-box 225 284 - -
Aed4g0997 287 SUPERFAMILY RING/U-box 53 139 - -
Aed4g0997 287 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 188 276 - -
Aed4g0997 287 SMART ibrneu5 126 216 IPR002867 -
Aed4g0997 287 SMART ibrneu5 224 282 IPR002867 -
Aed4g0997 287 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 188 276 IPR031127 GO:0004842|GO:0016567
Aed4g0997 287 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0997 Aed-Chr4 9155400 9157157 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0997 46 272 C3H Transcription Factor Family AT2G19610 29.004 8.88e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0997 K11975 - rcu:8259039 237.269