Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0982 ATGGCACTGCTTCTGCTGCAATTTCTTCTCCTTCTGCTCGCTGTTGCATCTCATGGACTCGCTTCCAATGCGACACTGAACGAGACTTGTGGAGACTTCTATGGTTCTCCCAATACGGACCCAAAAGTGCCTTGCCCAATTGGTTGGGTTATGGACTCTAACAAGACCAAGTGCTTTTTCCATGTTGGGAAGCCTCAATCTTGGAATGACTCAGAGACCTGTTGCAGTAAGTATGGTGGACATTTAGTGTCATTGACATCGCTTCAGGAGCTGCAATTTGCTCAGAGCCTATGCGGTGAATCTATAAATAGTTGTTGGATTGGTGGGCAAAGACTCAACTCTACAGCTGGTTATCAGTGGATGTGGTCTGACAATTCACCGTGGAATAACTCCATATTTCCTATGGTTGATGTTCCACCCCATTGTAATGGAACTGGACTATCCTGTCAAAGGAACAGTACAGACAATTTATGTACAGTAGTGACTAATAATTCAAACACTGTCATGACTGAGAGATGCGATAATCCTCATGCTTCTCTATGTATACTTGATATAGATACAAAATTTAACCAAATGCACCGCCGCAGGGAATACCTTATCATCCTCACAGTGGTGAGTGCCTTGATACTCTCCACAACATTAGCAGTGGTAGTTTGGCTTCTTGTACATAAGCGAGGCAAGAAAAGAAGGCGGTCTAGAAGACTATCTATTCCAGGATCTTCCCTTCCATCATGGAAAGTCTTTACCAAAGAGGAATTAAGGTCAATTACAAAGAATTTCAGTGAAGGTAACCGTCTTGTTGGGGATACCAAGACTGGTGGTACATACAGTGGGGTTTTATCAGATGGTTCAAGGGTCGCAGTTAAAAGATTAAAGAGGTCAAGCTTTCAGAGGAAAAAGGAGTTCTCTTCTGAAATTGGCAGGGTTGCTAGGCTTCGTCATCCTAATCTGGTGGTTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCATATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGAATGAAAATTGCGACGACGCTTGCTCAAGGAATTGCGTTTCTGCATGACAAGGTTAAGCCACAAGTGGTGCATCGAGATATACGCGCTACCAACGTACTGCTGGACGAGGAGTTTGGAGCACACCTTATGGGCGTTGGTCTGTCCAAGTTTGTGCCATACGAGGTAATGCATGAGAGGACAGTGATGGCGGGTGGAACTTACGGATACCTCGCTCCAGAGTTCGTGTACAGGAACGAGCTCACGACAAAGAGCGACGTGTATAGTTTCGGTGTCCTACTACTTGAAATCGTAAGCGGACGCAGACCCGCACAGGCGGTGGATTCTGTGGGCTGGCAGAGTATATTTGAGTGGGCAACACCTCTTGTGCAGGCTCATCGCTATCATGAACTCTTGGATCTTCATATAACTTCCTCCTCTTCTAGTATCATCCCAGAGGCTAGCACCATCCAAAAGGTTGTGGACCTTGTTTATTCTTGCACACAGCATGTCCCTTCTATGCGTCCTAGAATGTCTCATGTTGTTCACCAGCTGCAACAGATTGCACAGCCACCTGCAAAGTAA 1644 0.4562 MALLLLQFLLLLLAVASHGLASNATLNETCGDFYGSPNTDPKVPCPIGWVMDSNKTKCFFHVGKPQSWNDSETCCSKYGGHLVSLTSLQELQFAQSLCGESINSCWIGGQRLNSTAGYQWMWSDNSPWNNSIFPMVDVPPHCNGTGLSCQRNSTDNLCTVVTNNSNTVMTERCDNPHASLCILDIDTKFNQMHRRREYLIILTVVSALILSTTLAVVVWLLVHKRGKKRRRSRRLSIPGSSLPSWKVFTKEELRSITKNFSEGNRLVGDTKTGGTYSGVLSDGSRVAVKRLKRSSFQRKKEFSSEIGRVARLRHPNLVVVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRATNVLLDEEFGAHLMGVGLSKFVPYEVMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYHELLDLHITSSSSSIIPEASTIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQIAQPPAK 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0982 547 Pfam Protein tyrosine and serine/threonine kinase 271 538 IPR001245 GO:0004672|GO:0006468
Aed4g0982 547 CDD CLECT 57 181 - -
Aed4g0982 547 Gene3D - 41 198 IPR016186 -
Aed4g0982 547 PANTHER - 3 543 - -
Aed4g0982 547 SMART tyrkin_6 270 538 IPR020635 GO:0004713|GO:0006468
Aed4g0982 547 ProSitePatterns Tyrosine protein kinases specific active-site signature. 383 395 IPR008266 GO:0004672|GO:0006468
Aed4g0982 547 SUPERFAMILY Protein kinase-like (PK-like) 234 539 IPR011009 -
Aed4g0982 547 Gene3D Transferase(Phosphotransferase) domain 1 337 546 - -
Aed4g0982 547 SMART CLECT_2 45 182 IPR001304 -
Aed4g0982 547 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 3 543 - -
Aed4g0982 547 SUPERFAMILY C-type lectin-like 33 182 IPR016187 -
Aed4g0982 547 ProSiteProfiles C-type lectin domain profile. 54 182 IPR001304 -
Aed4g0982 547 Pfam Lectin C-type domain 65 181 IPR001304 -
Aed4g0982 547 Gene3D Phosphorylase Kinase; domain 1 239 336 - -
Aed4g0982 547 ProSiteProfiles Protein kinase domain profile. 261 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0982 Aed-Chr4 9005656 9012013 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0982 75 544 Receptor kinase-like Gene Family AT1G52310 69.937 0.0 652
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Aed4g0982 PK_Tyr_Ser-Thr 2.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0982 - - gmx:100779497 989.564