Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0980 ATGGGGGCGAAGAAGCAGGGCCAGGGAGTGAAAAATGAGGGCAATGGCACCAACAGTGATGTTTTCGCTTCATGCTCCTTCTCAAGCCTTGGACTTGATTCCAATTTGTGTGAACAACTTCATGAGAGGTTGGGGTTTGAAGTTCCGACGCTGGTGCAAGCTCAAGCAATCCCTGTTATTCTCAAGGGGCGTCATGCACTGGTGAATGCTGCAACGGGCACAGGGAAGACTGTGGCGTATTTGGCTCCGATTATTCATCACTTGAAGGGTAATGAAAATCGGATTCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCGACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGCGAAAAGAGATCAAAGGAGAAAGCTAGACTGCGCAAAGGCATATCAATTCTTATAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAACACAACATCATTCATGCACTCAAATTTACGCTGGATAATTTTTGATGAAGCTGATCGGATTTTGGAATTGGGATTTGGAAAAGATATAGAGGAAATACTAGATCTTTTAGGTTCAAGGAAAAAAGGGAAGGATAAACAAGAGAATACAGTTTCAACACACTCTAAAATTCAAAGACAGAATTTGCTTTTATCTGCCACCTTAAATGAAAAAGTGAACCACCTTGCTAAAATGAGTCTAGACAATCCAGTTATGATTGGTCTTGATGATAAGAAAATACAACCTATTTCAACAATTAAAAGGCTCGATCCTTCAGATTCTGACGAAGAGAATGAAGATAAGTATTCCAGTAAAGTACCAACAGTTGGAGATTACAAAGTTCCCACACAGTTGATTCAGAGATACATGAAAGTACCTTGTGGCTCACGACTTCCTGTACTTCTTTCAATTCTAAAGCATCTCTTTGAAAGGGAACCTTTACAAAAGGTTGTTCTATTCTTTTCAACATGTGATGCAGTAGACTTTCACTATTCACTGTTAAGTGAATTTAAATTTTCATCCTATCCACAAGCAGAAGGGGACCGACAGCTGTTTCTTGGATGCAAAACTTTCCGGTTACATGGTAATATGGAACAAGAGGACCGGAGAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCTTTGCTTTTGTCCACTGATGTTTCTGCTAGAGGATTGGATTTTCCAAAGGTTAGGTGCATCATACAATATGATTCTCCTGGGGAAGCTACGGAATATGTTCATAGAGTTGGTAGAAGTGCTCGACTAGGTGAAAGAGGCGAGTCATTATTATTTCTGCAACCAGCTGAAATAGACTATTTACAGGACTTGGAGAAGCATGGTGTCTCACTCATGGAGTATCCTGTCCTCAAAATGTTGGATAATTTTCCACTACATGGACTAAAGAACCACACAAAGAAGTCTGTTTTCTTAGAGTCACATCCCTGGGTCCTTTCTCTCCAGAGGGCACTTGAAGCCTTCATCATGTCCAAGCCAGAGATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTTCGTGCATACACAGCTCACCGTGGTGAGCTGAAAAGAATATTTATGATCAAGAAACTTCACTTGGGGCACGTAGCAAAAAGCTTTGCACTGAAACAACAACCCTCCTTAGTTGGACAAGCATTCCAAAAGCAAACCAAGAAGAGAAAGAGATTTGAGAAGAAAAATGGGTTGTTGGGCTTTGGGGCCCCAGGAAAGTTATTAAAACATAAAATTGGGTTGTCAAAAAAGAGAAAAGTTGCCAGTGTGTGA 1830 0.412 MGAKKQGQGVKNEGNGTNSDVFASCSFSSLGLDSNLCEQLHERLGFEVPTLVQAQAIPVILKGRHALVNAATGTGKTVAYLAPIIHHLKGNENRIQRSDGTFALVLVPTRELCLQVYEILQKLLHRFHWIVPGYIMGGEKRSKEKARLRKGISILIATPGRLLDHLKNTTSFMHSNLRWIIFDEADRILELGFGKDIEEILDLLGSRKKGKDKQENTVSTHSKIQRQNLLLSATLNEKVNHLAKMSLDNPVMIGLDDKKIQPISTIKRLDPSDSDEENEDKYSSKVPTVGDYKVPTQLIQRYMKVPCGSRLPVLLSILKHLFEREPLQKVVLFFSTCDAVDFHYSLLSEFKFSSYPQAEGDRQLFLGCKTFRLHGNMEQEDRRTSFQAFKTEKSALLLSTDVSARGLDFPKVRCIIQYDSPGEATEYVHRVGRSARLGERGESLLFLQPAEIDYLQDLEKHGVSLMEYPVLKMLDNFPLHGLKNHTKKSVFLESHPWVLSLQRALEAFIMSKPEMDELAKKAFCSWVRAYTAHRGELKRIFMIKKLHLGHVAKSFALKQQPSLVGQAFQKQTKKRKRFEKKNGLLGFGAPGKLLKHKIGLSKKRKVASV 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0980 609 PANTHER RNA HELICASE 14 578 - -
Aed4g0980 609 Gene3D - 3 256 IPR027417 -
Aed4g0980 609 Gene3D - 309 584 IPR027417 -
Aed4g0980 609 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 181 189 IPR000629 -
Aed4g0980 609 CDD SF2_C_DEAD 298 447 - -
Aed4g0980 609 Pfam DEAD/DEAH box helicase 51 241 IPR011545 GO:0003676|GO:0005524
Aed4g0980 609 Pfam Domain of unknown function (DUF4217) 502 562 IPR025313 -
Aed4g0980 609 CDD DEADc_DDX31 36 254 - -
Aed4g0980 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 482 IPR027417 -
Aed4g0980 609 Pfam Helicase conserved C-terminal domain 316 438 IPR001650 -
Aed4g0980 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 25 54 IPR014014 GO:0003724
Aed4g0980 609 SMART ultradead3 45 261 IPR014001 -
Aed4g0980 609 SMART DUF4217_3 500 565 IPR025313 -
Aed4g0980 609 MobiDBLite consensus disorder prediction 266 286 - -
Aed4g0980 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 57 253 IPR014001 -
Aed4g0980 609 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 14 578 - -
Aed4g0980 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 313 485 IPR001650 -
Aed4g0980 609 SMART helicmild6 341 438 IPR001650 -
Aed4g0980 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 253 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0980 Aed-Chr4 8997464 9003492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0980 26 461 Eukaryotic Initiation Factors Gene Family AT3G19760 25.400 5.37e-35 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0980 K14806 - gmx:100805157 1067.76