Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0978 ATGGCCAGCGCTCAGTTCACAGCAATAGCGTCGTCGATCTCTACGGCGTCGTTTGAAGGGCTTCGACCTTCCGCGGTTCAGTTTCCATGCGCCGGCCGTGTCAGAATTGCCAATCTCCGCCAGAGGTCCTTTCGGGGCTTTGCTGTCAAAGCCGCCACCGTTGTTGCCCCCAAATACACCGCGATTAAGCCTCTGGGTGACAGAGTGCTGATAAAATTAAAGGAAGCGGAAGAGAAATCTGAGGGTGGGATTTTGCTTCCATCATCTGCTCAAACCAAGCCTCAAGGGGGTGAGGTAGTTGCTGTTGGGGAAGGAAAGACAGCCGGGAAGACAAATGTGGAGATCAGTGTGAAGACCGGTGCGCAAGTTGTGTATTCGAAGTATGCAGGGACTGAGGTGGATTTCAATGGTACAAAGCACCTTATTTTGAAGGATGATGACATTGTTGGTATCCTTGAAACTGATGACATCAAGGATCTTAAACCCTTGAATGATAGAGTCCTCATTAAGGTTGCTGAAGCCGAGGAAAAAACCGCTGGTGGTAACAGAAAACCATTGTCCGTGACTCCCGGCAACACGGTTTTGTACTCCAAATATGCTGGAAATGACTTCAAGGGCAAAGATGGTTCTAACTACATTACCTTGAGGGTCTCTGATGTCATGGCTGTCCTTTCCTAG 678 0.4912 MASAQFTAIASSISTASFEGLRPSAVQFPCAGRVRIANLRQRSFRGFAVKAATVVAPKYTAIKPLGDRVLIKLKEAEEKSEGGILLPSSAQTKPQGGEVVAVGEGKTAGKTNVEISVKTGAQVVYSKYAGTEVDFNGTKHLILKDDDIVGILETDDIKDLKPLNDRVLIKVAEAEEKTAGGNRKPLSVTPGNTVLYSKYAGNDFKGKDGSNYITLRVSDVMAVLS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0978 225 SUPERFAMILY GroES-like 60 153 IPR011032 -
Aed4g0978 225 SMART Cpn10_2 61 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 SMART Cpn10_2 159 224 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 CDD cpn10 62 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 CDD cpn10 160 224 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 Pfam Chaperonin 10 Kd subunit 62 151 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 Pfam Chaperonin 10 Kd subunit 181 223 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 Hamap Co-chaperonin GroES [groES]. 61 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 PRINTS 10kDa chaperonin signature 62 77 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 PRINTS 10kDa chaperonin signature 84 105 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 PRINTS 10kDa chaperonin signature 139 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 PRINTS 10kDa chaperonin signature 118 130 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 PANTHER GROES CHAPERONIN 181 225 - -
Aed4g0978 225 PANTHER GROES CHAPERONIN 1 181 - -
Aed4g0978 225 PANTHER 10 KDA HEAT SHOCK PROTEIN 181 225 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 181 IPR020818 GO:0005524|GO:0006457|GO:0140662
Aed4g0978 225 SUPERFAMILY GroES-like 159 224 IPR011032 -
Aed4g0978 225 Gene3D GroES chaperonin 155 180 IPR037124 GO:0006457
Aed4g0978 225 Gene3D GroES chaperonin 181 225 IPR037124 GO:0006457
Aed4g0978 225 Gene3D GroES chaperonin 54 154 IPR037124 GO:0006457
Aed4g0978 225 ProSitePatterns Chaperonins cpn10 signature. 62 86 IPR018369 GO:0005524|GO:0006457
Aed4g0978 225 PIRSF Cpn21 1 182 IPR017416 GO:0006457|GO:0046914|GO:1901671
Aed4g0978 225 PIRSF Cpn21 180 225 IPR017416 GO:0006457|GO:0046914|GO:1901671
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0978 Aed-Chr4 8958835 8961649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0978 1 225 Calmodulin-binding Proteins AT5G20720 63.672 1.70e-107 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0978 K04078 - gmx:100814751 379.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2173 6 24038756 24042664 Aed4g0978 4 8958835 8961649 PCT