Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0977 ATGGTGAAACCAAAGAGCGTGGAAAAACCTGCGGAGGAACAAAGAAGAGTTCCATCGTTCCGAGGAGTGCGGAAGAGGAAGTGGGGGAAGTACGTGTCGGAAATCAGGCTTCCCAACAGCCGCCAAAGGATTTGGTTGGGCTCCTACGATAGCGCCGAGAAGGCGGCGCGTGCCTTCGACGCGGCTATGTTCTGCTTACGTGGCAGCGGCGCCAACTTTAATTTCCCGAGCGACCCACCCGACATCGCCGGCGGGAGAGCCATGACGCCGCCCCAGATTCAGATCGCCGCGGCGCTTTTCGCCAATTCGGAGCCCCGAAAGGAGTGTTCGGGTCAGCCCGCGGAGTGTTTGACTTCGGATGAGGAAACGACGTCGTTGCCTTTGGACACGGATACATCATCATTTCAATCTCCTCCTCCCTCGGAAGTGACGGTCCAAAACGACACCGAATCACTGTCGATTTCGGATATGTTTTCGGATCGTGGGTCGAATACTTTTGTACCCGATTTCTCCGATTTTCCGAGCTTCGACGATTTCAGCCACGATTTCTTCGTGCATGAGCTTCCTGGTTTCGATTACGAAGAAGAGAACTTGGATGGGTTGATAATTCAGGACTCGTTCTTGTGGAATTTCTAA 636 0.5362 MVKPKSVEKPAEEQRRVPSFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMFCLRGSGANFNFPSDPPDIAGGRAMTPPQIQIAAALFANSEPRKECSGQPAECLTSDEETTSLPLDTDTSSFQSPPPSEVTVQNDTESLSISDMFSDRGSNTFVPDFSDFPSFDDFSHDFFVHELPGFDYEEENLDGLIIQDSFLWNF 211
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0977 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 211 - -
Aed4g0977 211 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 5 211 - -
Aed4g0977 211 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Aed4g0977 211 Gene3D AP2/ERF domain 19 77 IPR036955 GO:0003700|GO:0006355
Aed4g0977 211 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Aed4g0977 211 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Aed4g0977 211 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Aed4g0977 211 MobiDBLite consensus disorder prediction 104 145 - -
Aed4g0977 211 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Aed4g0977 211 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Aed4g0977 211 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Aed4g0977 211 MobiDBLite consensus disorder prediction 116 145 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aed4g0977 Aed-Chr4 8934456 8935091 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0977 20 211 AP2-EREBP Transcription Factor Family AT1G19210 48.259 2.07e-48 155
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed4g0977 AP2 2.9e-12 CL0081
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0977 - - gmx:100813688 305.834