Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0972 ATGGCCGTTGTTCGTGTCCTCCTCTTGTTCTTGTTTTTCTCTTCCACCACATTCGCCTTACCCGAAACCGAATCCCTCCTCCGTCTCAAACAATCCCTCACCAACGCCGACCGCTCCCTCTCCTCCTGGATCCCCAACGTGTCCCCTTGCTCCGGCACGTGGCTCGGCGTTGTCTGCCACGAGAACAAAATCACGGGACTGCGCCTCTCCGACCTGGGCCTCTCGGGCTCAATCGACATAAACGCCCTTGTCGAGATCCGCAGCCTCCGAACCGTCAGCTTCGTCAACAACTCCTTCTCCGGCCCAATCCCCAGTTTCAACAAACTCGGCTCCATCAAGTCCATCTTCTTAACCCAAAACCACTTCTCCGGAACCATCCCCCACGACTTCTTCCTCCCACTCAACTCTCTCAAAAAACTCTGGCTCTCCGGCAACAACTTCTCCGGCGAAATTCCCAAATCCTTAGCAGAACTCGATCTCCTTGAAGAGCTCCACCTCGAGTATAACTCCTTCTACGGTCCAATCCCGAACTTCAACCAGGGCTTCAAATCCCTAGATCTCTCCAACAACAGGCTCGAAGGCGCGATTCCCGAGAGCCTCGCGAGATTCAGCGCGACTTCCTTCAACCGAAACGAAGCACTCTGCGGGAAGCCGTTGGACAAGCCTTGTAACAGTTCATCTTCTTCTTACTCGTTGTCGAGTGATGTGAATGGAGACACGTACGGTTCAGGCTGGGCGCCGAAGGTGATTGTGGTATTAGTAATAGCGGCGGCGGCGGCGGTGATGTTTCTCTTCGCAAAGCGGCAGCGGCGCCGGGACGGGGATTTCAGGGCGGTGAGCAGGAGCAGCAACGTGGAGGAGGTGCACACCGTGGAGGTGCCGAGCGTGAGGTCGGGCGGCGGCGATAGGAGGGAGGTGGCGAACAAGAGAGGGGATATTGTGATGGTGAACGACGAGAGAGGCGTATTCGGATTGCAGGATTTGATGAAGGCGTCGGCGGAGGTGCTCGGGAACGGGGGGCTGGGGTCGGCGTACAAGGCGGCGATGGCCATGGGGCCGTCGGTGGTGGTGAAGAGGATGAGGGAGATGAATAAGATCGGGAAGGACGTGTTTGACGCTGAGATGAGGCAGTTTGGGAGGATACGACACCGTAATGTTATAACGCCGCTGGCTTACCATTACCGCAGAGAGGAAAAGCTCTTCATCAACGAGTACATGCCCAAAGGAAGCTTGTTGTATGTCTTGCACGGGTTGAAATTCCTTTACACTGAATTTTCTAGCTATGACCTTCCCCATGGGAACCTCAAGTCCAGCAACGTTCTCCTAACTAATGACTACGAGCCTCTCTTGAGTGACTACGCCTTTCAGCCACTAATCAACCCCAGCATCGCTGTACAAGCATTGTTCGCCTTCAAATCCCCGGATTACGTCCATAACCAGAAAGTTTCGCAGAAGACCGATGTCTATTGCCTCGGCATCATCATTCTTGAGATCATCACGGGGAAGTTCCCTGCCCAGTATCATAGAAATGGCAAGGGTGGCACTGATGTTGTGCAATGGGTCCTCACTGCAATTTCTGAGGGAAAAGAAACAGAGTCGATCGATTCAGAGTTACTCAACGAGACAAATTCGCGCGATAACATGCTGCATCTTCTCCACATTGGGGCTGCTTGCGTCGAAAGCAACCCTGAACAAAGACTAAAAATGAAGGAAGCTATTAGAAGGATAGAGGAGGTACAGCATCATTTAGCAGATCCCAAATCCTTTGAGGCGGTGTTTGATTTTTGGTTGTCCAAGCAACAAGTATAA 1809 0.5301 MAVVRVLLLFLFFSSTTFALPETESLLRLKQSLTNADRSLSSWIPNVSPCSGTWLGVVCHENKITGLRLSDLGLSGSIDINALVEIRSLRTVSFVNNSFSGPIPSFNKLGSIKSIFLTQNHFSGTIPHDFFLPLNSLKKLWLSGNNFSGEIPKSLAELDLLEELHLEYNSFYGPIPNFNQGFKSLDLSNNRLEGAIPESLARFSATSFNRNEALCGKPLDKPCNSSSSSYSLSSDVNGDTYGSGWAPKVIVVLVIAAAAAVMFLFAKRQRRRDGDFRAVSRSSNVEEVHTVEVPSVRSGGGDRREVANKRGDIVMVNDERGVFGLQDLMKASAEVLGNGGLGSAYKAAMAMGPSVVVKRMREMNKIGKDVFDAEMRQFGRIRHRNVITPLAYHYRREEKLFINEYMPKGSLLYVLHGLKFLYTEFSSYDLPHGNLKSSNVLLTNDYEPLLSDYAFQPLINPSIAVQALFAFKSPDYVHNQKVSQKTDVYCLGIIILEIITGKFPAQYHRNGKGGTDVVQWVLTAISEGKETESIDSELLNETNSRDNMLHLLHIGAACVESNPEQRLKMKEAIRRIEEVQHHLADPKSFEAVFDFWLSKQQV 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0972 602 Pfam Leucine Rich Repeat 136 157 IPR001611 GO:0005515
Aed4g0972 602 Pfam Leucine Rich Repeat 183 201 IPR001611 GO:0005515
Aed4g0972 602 PANTHER LRR RECEPTOR-LIKE KINASE 4 417 - -
Aed4g0972 602 PANTHER LRR RECEPTOR-LIKE KINASE 417 580 - -
Aed4g0972 602 Pfam Leucine rich repeat N-terminal domain 21 59 IPR013210 -
Aed4g0972 602 SUPERFAMILY Protein kinase-like (PK-like) 334 577 IPR011009 -
Aed4g0972 602 SUPERFAMILY L domain-like 26 204 - -
Aed4g0972 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 417 580 - -
Aed4g0972 602 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 4 417 - -
Aed4g0972 602 Pfam Protein kinase domain 334 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0972 602 Gene3D Ribonuclease Inhibitor 133 225 IPR032675 -
Aed4g0972 602 Gene3D Ribonuclease Inhibitor 21 132 IPR032675 -
Aed4g0972 602 Gene3D Transferase(Phosphotransferase) domain 1 406 592 - -
Aed4g0972 602 Gene3D Phosphorylase Kinase; domain 1 300 405 - -
Aed4g0972 602 ProSiteProfiles Protein kinase domain profile. 330 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0972 Aed-Chr4 8888815 8891599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0972 7 579 Receptor kinase-like Gene Family AT3G42880 46.411 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed4g0972 Pkinase 2.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0972 - - gmx:100790660 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2167 6 23985229 23988371 Aed4g0972 4 8888815 8891599 PCT