Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0965 ATGATTCACAAGGACCTTGATTCTGGAAAACCTTCTATAAGGTTGCTATATGTGACTCCGGAGTTGATAGCAACACCAGGGTTTATGTCAAAGCTGACAAAGATTTATACTAGGGGGTTGCTAAATCTCATTGCCATAGATGAGGCACATTGCATCTCAAGTTGGGGTCATGATTTCAGACCTAGCTATCGTAAGCTTTCATCTTTGAGAAGCCACCTACCAGATGTACCAATATTAGCTGTGACTGCTACTGCTGTGCCTAAGGTTCAGAAGGATGTAGTTGAATCCCTGCAGATGCAAAATCCATTAATACTCAAGTCTTCATTTAATCGTCCTAATATATATTATGAAGTTAGATACAAAGACCTATTGGATGATGCTTATGCTGATTTATCTAATACACTCAAATCACTGGGAGATGTCTGTGCAATAGTGTACTGCCTTGAACGTTCAATGTGTGACGACTTGTCAACTAATCTATCCCAACGTGGCATTTCATGTGCTGCTTATCATGCAGGATTGAATAATAAATTGCGAACTTCGGTCTTAGATGATTGGATTTCTTCTAAAATTAAAGTAGTTGTTGCTACTGTTGCTTTTGGGTATGGCATTGATAGAAAGGATGTCAGGATTGTGTGCCACTTCAATATCCCCAAGTCAATGGAAGGATTCTATCAAGAGTCAGGCAGAGCAGGTCGTGATCAATTGCCATCTAGAAGTCTGTTGTACTATGGGGTAGATGATCGCAAAAGAATGGAATTTATATTAAGTAAATTGGAGAGCAAGAAGTCACAGTCATCTAGTTCACAACAAGAATCATCCAAAATGTCCCTGATTGCTTTCAATCAGATGGTTGAATATTGTGAAGCATCTGGATGTCGCAGGAAAAGGATTCTCGAGAGTTTTGGGGAACTGGTAACTGCATCGCTATGTGCAAAAACATGTGATGCCTGTAGACACCCAAACTTAGTTGCCAGATATTTGGAGAATCTCACAACTGCTTGTGCTCTACGCCAGAAAAATGGTTCTTCTCGAGTTTTTATGACCAGTTCCACTGATGCTATTGATGGAAAACAGTTATCTGAATTCTGGAATCAGGATGAGGAAGCAAGTGGATCAGAGGAAGATATATCTGATTCAGATGGTAGTACACTAGTACCTAATTTATTTCACTTGCTCGTGTTTTACTCTTGGGGTGAAGAGGTGGTTAATAGACTATACATTCACGTGGATGAATTTTCATTGGCAGATGATAATGAGGTTGTCAACAACCTAACCCGGTCAAAGCTTCAATCCAAATTGGGATTAAATGAAAAGTTTGATATGTTACAACGGGCAGAAGAAAACTTCTATCAAAATAATAACACTTACGAGCAGAGCAACAAAGTTGACAAAAATGCTATTTCTGATCCAATGCGGGTAGCAAGCAGGCAAAGGTTACAAAATGCTTTTAAACAGGCTCAGCAACGGCTTGACAACTTCAAGATTGAAATGGAAACATCAGCATCTTTCCTTGAAGATGAATGCTATAAGAAATATGGCAAAGCTGGCAAATCATTCTATTATTCACAAGTGGCAAGTACTGTAAGATGGCTGACAACTGCTAGTTCTACTGAATTGATGAACCGACTTTGTGCAATTAGTGCTTCCGCCTCAATGAATGTCTCGTCTGAAGCTGAACAACTACTCACCCTTGCTGATCAGCCCCTAACATCACCGCCACCTGCTTCAGATCCTTGTGCAAAAGATACCAGCAATGAACACTCACGCAATGCTAGATCAGACACTTCCCCATGTATTGTTCCAATGGAAGAAAGTTCTTCGTTTAATACCAAGTTACCACAAATACCATCTTTCTCTGAATTCGTAAATAGTAGGAAAGCAAAAGGGGACCAATTACGTGACACCAAAAAGCATTCAAGAGTCGAAAAGAAGATGAGAATACAGTAG 1950 0.3974 MIHKDLDSGKPSIRLLYVTPELIATPGFMSKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRSHLPDVPILAVTATAVPKVQKDVVESLQMQNPLILKSSFNRPNIYYEVRYKDLLDDAYADLSNTLKSLGDVCAIVYCLERSMCDDLSTNLSQRGISCAAYHAGLNNKLRTSVLDDWISSKIKVVVATVAFGYGIDRKDVRIVCHFNIPKSMEGFYQESGRAGRDQLPSRSLLYYGVDDRKRMEFILSKLESKKSQSSSSQQESSKMSLIAFNQMVEYCEASGCRRKRILESFGELVTASLCAKTCDACRHPNLVARYLENLTTACALRQKNGSSRVFMTSSTDAIDGKQLSEFWNQDEEASGSEEDISDSDGSTLVPNLFHLLVFYSWGEEVVNRLYIHVDEFSLADDNEVVNNLTRSKLQSKLGLNEKFDMLQRAEENFYQNNNTYEQSNKVDKNAISDPMRVASRQRLQNAFKQAQQRLDNFKIEMETSASFLEDECYKKYGKAGKSFYYSQVASTVRWLTTASSTELMNRLCAISASASMNVSSEAEQLLTLADQPLTSPPPASDPCAKDTSNEHSRNARSDTSPCIVPMEESSSFNTKLPQIPSFSEFVNSRKAKGDQLRDTKKHSRVEKKMRIQ 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0965 649 MobiDBLite consensus disorder prediction 591 622 - -
Aed4g0965 649 Pfam RecQ zinc-binding 248 319 IPR032284 -
Aed4g0965 649 Gene3D - 111 337 IPR027417 -
Aed4g0965 649 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 2 363 - -
Aed4g0965 649 CDD SF2_C_RecQ 111 244 - -
Aed4g0965 649 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 3 322 IPR004589 GO:0004386|GO:0006310
Aed4g0965 649 CDD DEXHc_RecQ 5 110 - -
Aed4g0965 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 336 IPR027417 -
Aed4g0965 649 Pfam Helicase conserved C-terminal domain 135 233 IPR001650 -
Aed4g0965 649 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 363 - -
Aed4g0965 649 SMART helicmild6 154 235 IPR001650 -
Aed4g0965 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 103 IPR027417 -
Aed4g0965 649 Coils Coil 477 497 - -
Aed4g0965 649 PANTHER DNA HELICASE RECQ FAMILY MEMBER 410 634 - -
Aed4g0965 649 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 103 IPR014001 -
Aed4g0965 649 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 134 275 IPR001650 -
Aed4g0965 649 MobiDBLite consensus disorder prediction 568 649 - -
Aed4g0965 649 Gene3D - 1 110 IPR027417 -
Aed4g0965 649 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 410 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0965 Aed-Chr4 8846199 8853703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0965 24 233 Eukaryotic Initiation Factors Gene Family AT3G19760 23.423 2.99e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0965 - K10901 gmx:100819601 1019.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0965 4 8846199 8853703 Aed4g0965 4 8846199 8853703 ECH