Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0946 ATGATGAATGCAACAAGGAACAGGTTCCCCTTTACACCATCACAGTGGCAAGAGCTTGAGCACCAAGCTCTAATCTACAAGTACATGGCTTCAGGCATTTCCATTCCCCCTGATCTTCTCTTCACCATCAAAAGAAGCAGCAGCTACTTTGATTCCCCTCTCACCTCAAGGCTTTTGCCTAACCAGCCACACCACTTTGGATGGAACTATCTTCAGATGGGTTTGGGGAGAAAAATAGACCCTGAGCCAGGAAGGTGTAGAAGAACTGATGGCAAGAAATGGAGATGCTCCAAAGAAGCATACCCAGATTCTAAGTACTGTGAGAGGCACATGCACAGAGGGAAGAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAGCAGCAACAACAAATACAGCATCATCAACAGCAATAACTAATAACACAAATGCTTCAACACAACAACAAGCAATCTCATCAATCTCCAAAATTAATAGCAATCTTTCACCCCTTGCATCATCTGAGACTCAACACTATGGCTCCTTTCTCTATCATCACCCTCAAACAAGATCCTCTGGCATTGGCTTGTCCTTTGAAGACAACAGTTCCCCTTTGTTTCTTGACACTGGCTCTTGCTCTCAGTCCAACACTGACTGCAGGAGTAGGTATGTTTATGGAGAGAAAGAAGAGGTGGATGAGCATGCTTTCTTCACAGAACCATGTGGAGTTATGAAAAGCTTCTCTGCTTCCTCAATGGATGACACTTGGCAACTAACACCATTGACTATGAGTTCCTCATCTTCTTCTTCCAAACAGAGGAATCCCTTTGGCCTTTCCAATGACTACTCTTGCTTGCAACTTCAGAGCCACACAAAGCAACAAGAGCATCATCAAGATCAGGGTTGCTACATGTTTGGTGGTGGTGCTCATGTTGCGAAAGAAGAGCCTCAGAAAACTGTTCATCGCTTCTTTGATGAGTGGCCACACAAAGGAATAAGAGAAGGCTCTTGGCTTGACTTGGATGACAAATCTTCCACAACTCAACTTTCAATTTCCATTCCCACAACATCTTCTCAGGATTTTCCAACCTTCAGTTCCAGAACACACCATGGTAAATTTTGCTAA 1104 0.4375 MMNATRNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRSSSYFDSPLTSRLLPNQPHHFGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKAATTNTASSTAITNNTNASTQQQAISSISKINSNLSPLASSETQHYGSFLYHHPQTRSSGIGLSFEDNSSPLFLDTGSCSQSNTDCRSRYVYGEKEEVDEHAFFTEPCGVMKSFSASSMDDTWQLTPLTMSSSSSSSKQRNPFGLSNDYSCLQLQSHTKQQEHHQDQGCYMFGGGAHVAKEEPQKTVHRFFDEWPHKGIREGSWLDLDDKSSTTQLSISIPTTSSQDFPTFSSRTHHGKFC 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0946 367 Pfam WRC 81 123 IPR014977 -
Aed4g0946 367 PANTHER GROWTH-REGULATING FACTOR 6 7 352 - -
Aed4g0946 367 ProSiteProfiles QLQ domain profile. 10 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aed4g0946 367 SMART QLQ_2 9 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aed4g0946 367 Pfam QLQ 10 43 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aed4g0946 367 ProSiteProfiles WRC domain profile. 80 124 IPR014977 -
Aed4g0946 367 PANTHER - 7 352 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0946 Aed-Chr4 8654155 8655896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0946 5 143 GRF Transcription Factor Family AT3G13960 63.571 3.79e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Aed4g0946 WRC 7.7e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0946 - - gmx:100781613 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0946 4 8654155 8655896 Aed4g0946 4 8654155 8655896 ECH
Aed6g2145 6 23835131 23837697 Aed4g0946 4 8654155 8655896 PCT