Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0944 ATGGAAACGAATAAGGAGTACTGTTCTGAAAAAAAAGAAGAGCCTTGTTGGTCTTCTCATGAAGACCAAATTCTCTTCAACTTTGTTCAACTCCGTGGTGAAGGAAACTGGAGAGACCTTCCTAAAAGAGCTGGCTTGAAACGCTGTGGTGAGAGTTGCAAACAGCGATGGTTGAATTATCTGAAGCCAGCAGCCACTTCTAGAGGAAGCATTTCTTTGGATGAACATGACCTCATACTCAGACTGCATAAGCTCTTGGGAAATAGATGGTCTATCATTGCCGGACGATTACCGGGGCGCACCGCAGATGAGATCAAGAACTATTGGAATACCTATTTGAGCAAGGATAATGTTGCAGAAGAGAAGCAAAACAAGAACAAATTTATTCCAAGCACAAGTGTGACAACTACTACTACTGGCATGCCTAGTGTTCAATCTCCATTGTACTCCCAAAATTCCGTAGGTATCAATCCCATGGTGTCTCCAAATCATGTGATTATTAAACCTAAAGTTGTGAGGTTAACTAAGGTTGTCGCGCCAAGACATGTTGAGCTGGTAGCTGATGAAATACACAATGAATTTAACTATGGCCGGGATAGGCAGAACCACCTTTCTTCTGCATCCACTTGA 630 0.4254 METNKEYCSEKKEEPCWSSHEDQILFNFVQLRGEGNWRDLPKRAGLKRCGESCKQRWLNYLKPAATSRGSISLDEHDLILRLHKLLGNRWSIIAGRLPGRTADEIKNYWNTYLSKDNVAEEKQNKNKFIPSTSVTTTTTGMPSVQSPLYSQNSVGINPMVSPNHVIIKPKVVRLTKVVAPRHVELVADEIHNEFNYGRDRQNHLSSAST 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0944 209 SMART sant 13 63 IPR001005 -
Aed4g0944 209 SMART sant 67 115 IPR001005 -
Aed4g0944 209 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed4g0944 209 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Aed4g0944 209 CDD SANT 17 61 IPR001005 -
Aed4g0944 209 Gene3D - 16 65 - -
Aed4g0944 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 117 IPR017930 -
Aed4g0944 209 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 203 - -
Aed4g0944 209 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 65 IPR017930 -
Aed4g0944 209 CDD SANT 72 113 IPR001005 -
Aed4g0944 209 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 203 - -
Aed4g0944 209 Gene3D - 71 129 - -
Aed4g0944 209 SUPERFAMILY Homeodomain-like 16 109 IPR009057 -
Aed4g0944 209 Pfam Myb-like DNA-binding domain 16 61 IPR001005 -
Aed4g0944 209 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0944 Aed-Chr4 8621940 8623622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0944 11 115 MYB Transcription Factor Family AT3G13540 60.870 1.38e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g0944 Myb_DNA-binding 3.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0944 K09422 - gmx:778159 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0944 4 8621940 8623622 Aed6g2142 6 23823593 23824821 PCT