Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0939 ATGTCGCTGAATCTCACTGCAAACGCGATTCCGGCGATAATCGGCGGCGACGTGAACGCGAAACCGCTGGTTCAGGTTCTCGACGTAGCCTTAGTCTCCAACACCAACAACTCGCAGCAGCAGAGGTACCGTCTTCTGCTATCCGACGCCGTTTTCTCTCACCACGCGATGCTCGCGACTCAGCTCAACGACCGAGTCAAAGCCGGACGAGTTCAGAAGGGTTCTGTTATTCAGCTTCTCGATTATATATGCACTCCTCTCAAGAACCGCAAGATTATTGTGATTCTGAACATGGAAACTATAATGGCTGAGTGTGATAACATTGGGAATCCGAAGCCATATTTGGATTCTGAAATACCAACTGTGAGAGCATCAGCTGATGCCACTGTGGAGAATTTGGCCTGGAGTAGTAATAATAATAATAATTCTGCTGTTCAAAATGCAAGTCAAAATAGTGCTCAGAGTTTCAGGCCAACGATTCAACCTCCATATCAACCGCCTCCGGTTTATAAAGGCCGTGGGCCAGTTATGAAAAATGAGGCACCGGCACGCATCATTCCTATAGCTGCTTTAAATCCTTATCAGGGTCGGTGGGCCATCAAGGCAAGGGTAACTGCTAAAGGAGAACTGCGCCGTTATAATAATGCCCGTGGTGATGGGAAAGTTTTCTCATTTGATCTCCTTGATTCTGATGGAGGGGAAATACGCGTAACATGCTTTAATGCTGTCGTTGATCGCTTCTATAATGTAATTGAGGTTGGTAAAGTTTACATGATATCGAAAGGTAGCTTGAAACCTGCTCAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTATGTTGGAAGCAGCTTCAATGGTTGAGCTCTGCCCAGACGAAGATGGTTCTATACCTAAACAGCAGTTCTCCTTCAGGCCTATTAGTGACATTGAGAATGTTGAAAACAACTCCATCCTTGATGTTATTGGGGTAGTGACATCTGTGAATCCTTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACCCAGAGAAGAATTTTGAGTCTGAAGGACAGTTCCGGCAGGAGTGTCGAACTTACACTGTGGGGCGAATTCTGCAATAGGGAAGGACAACAGCTGCAAGAGATGGTGGATGCAGGAACTTTCCCAATTTTAGCAGTCAAAGCTGGGAAGGTGAATGATTTTAGTGGAAAGTCAATAGGTTCTATTTCTACCACGCAGCTTTTCATAAATCCTGATTTTCCTGAGGCTCATAGCTTAAGAGAATGGTTTGATCGGGTAGGAAAAGTTTCTGCCTCCCTATCTATTTCAAAGGACAATACTCCCGGAGGAGCTAAGAATGAGGTACGCAAAACTGTGTCTCAAATCAAGGATGAAGGTCTGGGGCGATCAGACAAGCCAGACTGGATAACAGTAAGGGCTGCTATATTATTCATCAAGACTGATACATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACAGTGCAATAAGAAAGTGATTAGGTCTGGAAACACAAGATGGCAATGTGATAGATGCAACCAAGAGTTTGAGGAGTGTGATTACCGATACCTTCTCCAAGTTCAAATTATGGATGGGTCAGGATTAGCTTGGGTAACTGCTTTCCAGGAAGCAGGGGAAGAGATCATGGAGTACTCAGCAAAGGATCTGTACTCTTTGAAACACGAAGAGCAGGATGATGATAAATTTGTAGAAATAATCAAGAGCCGACTCTTCAACCAGTATATGTTAAGGCTGAAAATCAAAGAGGAACTATACGGCGATGAACAGAAGGTGAAGATTACTGTAGTCAAGGCTGATAAGGTGAGCTATTCGTCAGAGAGTAGATACATGCTTGATACGATTTCCAAGTTTTGTAGGCAGTAA 1896 0.4393 MSLNLTANAIPAIIGGDVNAKPLVQVLDVALVSNTNNSQQQRYRLLLSDAVFSHHAMLATQLNDRVKAGRVQKGSVIQLLDYICTPLKNRKIIVILNMETIMAECDNIGNPKPYLDSEIPTVRASADATVENLAWSSNNNNNSAVQNASQNSAQSFRPTIQPPYQPPPVYKGRGPVMKNEAPARIIPIAALNPYQGRWAIKARVTAKGELRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYNVIEVGKVYMISKGSLKPAQKNFNHLKNEWEIMLEAASMVELCPDEDGSIPKQQFSFRPISDIENVENNSILDVIGVVTSVNPSVPILRKNGMETQRRILSLKDSSGRSVELTLWGEFCNREGQQLQEMVDAGTFPILAVKAGKVNDFSGKSIGSISTTQLFINPDFPEAHSLREWFDRVGKVSASLSISKDNTPGGAKNEVRKTVSQIKDEGLGRSDKPDWITVRAAILFIKTDTFCYTACPLMIGDRQCNKKVIRSGNTRWQCDRCNQEFEECDYRYLLQVQIMDGSGLAWVTAFQEAGEEIMEYSAKDLYSLKHEEQDDDKFVEIIKSRLFNQYMLRLKIKEELYGDEQKVKITVVKADKVSYSSESRYMLDTISKFCRQ 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0939 631 Gene3D - 297 434 IPR012340 -
Aed4g0939 631 CDD RPA1_DBD_B 319 426 - -
Aed4g0939 631 Pfam Replication factor-A C terminal domain 470 620 IPR013955 -
Aed4g0939 631 MobiDBLite consensus disorder prediction 137 159 - -
Aed4g0939 631 PANTHER REPLICATION FACTOR A 1, RFA1 3 625 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aed4g0939 631 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 5 627 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aed4g0939 631 SUPERFAMILY Nucleic acid-binding proteins 451 628 IPR012340 -
Aed4g0939 631 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aed4g0939 631 Pfam OB-fold nucleic acid binding domain 199 280 IPR004365 GO:0003676
Aed4g0939 631 Gene3D - 184 294 IPR012340 -
Aed4g0939 631 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 3 625 - -
Aed4g0939 631 CDD RPA1N 9 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Aed4g0939 631 MobiDBLite consensus disorder prediction 137 165 - -
Aed4g0939 631 Gene3D - 4 115 IPR012340 -
Aed4g0939 631 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Aed4g0939 631 SUPERFAMILY Nucleic acid-binding proteins 184 297 IPR012340 -
Aed4g0939 631 SUPERFAMILY Nucleic acid-binding proteins 302 429 IPR012340 -
Aed4g0939 631 Gene3D - 435 629 IPR012340 -
Aed4g0939 631 CDD RPA1_DBD_A 187 290 - -
Aed4g0939 631 CDD RPA1_DBD_C 454 627 IPR013955 -
Aed4g0939 631 Pfam Replication protein A OB domain 308 412 IPR031657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0939 Aed-Chr4 8594671 8598405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0939 26 627 Core DNA Replication Machinery Family AT2G06510 68.182 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0939 K07466 - gmx:100792409 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0939 4 8594671 8598405 Aed4g0939 4 8594671 8598405 ECH