Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0938 ATGGAAAAAGAAAGAGGTTGTGTGGCAGGCACGGAAGTGACAAAGAACGAGGTCGTTCTACGAATTTCAGACGCTGAAGAAGCCATGTATGCAAAGAAGGAACAAATAGATTCTACAAGTTTCCCAGTAGCTGAAAGCAGTTCCCTTTCTCCTCAGCACAATAGCCACAAAGGTACAGGGTTTACTGATGAACTCACAGAGCTTGAGAATGTAACAAACAAGTGTCAAGTTTCCACAGAGTTGGTGACAACAACTACAAAGAGGAATTCTCCCAACAACAATATTCCTGAAGCAACTTTTGTTATCCTAAGAACACCCTTGCTTGGGACTCAAGGGGAAGAAGAAGATGATGATGAAGAAGTGTACAAGACTGCGCACATTGAAATGAGCAAGAGATTTGGTAAGAGGTGGAGAGTGTTGGGTTTTGTTGAGTGGTTTGCTTTTTTCTGCATAATGGGGTTTTTCATTACAAGCTTGGCAGTTCATAAGTTGCAACATAGGGAAATTTGGAGTTTGGAACTGTGGAAATGGTGTGTGTTGGGATTGGTTATTCTGTGTGGCAGACTTGTCAGTGAGTGGTTTATCAATCTTTTGGTTTTCATGATTGAGAGGAACTTCTTGTTTAAGAAGAAAGTTTTGTATTTTGTTTATGGTGTGAAGAAGAGTGTTCAAGGCTTTATATGGCTAAGTTTGGTTCTTTTGACATGGGGTCTGTTTTTCCACCTTGGAGTGAAGAGAACCAGAAAGGTTACTAGGATTCTCAATTACATCACAAGGGCCCTTGCTTCTTGTCTTATGGGAGCAGTTATATGGTTAGCAAAAACATTGTTAATAAAGCTGCTAGATTCAAAATTTCAATCTACTAGATTTTTTGACAGGGTTCAAGAATCAATCTTTCACCAATACATTCTTAGGACACTTTCGGGTCCTCCCTTGATGGAGAAAGTAGGCAAGACTTCGAGTAGCGGCAGACTCAATTTTAAGACTGTGATCAATGAGAAGGAAGCACAAGTCATTGATGTAGAGAGGCTCAAGAAAATGAAACAAGAGAAGGTTTCTGCTTGGACCATGAAAGGGTTGATTAATGTCATAAGGAGTTCTGGCTTGTCTACAATTTCATATACACCTAAGAATGCAGATGATGATCAAAGTGATCAGAAAGATAATGAAATTACTAATGAGTATATTGAGAAGGATGACCTCTTGCAATTCATGAAAAATGAAGAAGTGGAAAATGTGCTTCCACTATTCGAAAGGGAAGTTGAGACTGGAAGAATTAAGAGGAAGTTTCTTAAGAACTGGCTGGTGAAAGTCTACATTAAACGTCGATCACTTGTACATTCGCTAAAGGATACCAAAACAGCCGTTGATGACTTGAATATGCTTGCTTCAGTATTTGTACTTATTGTGATCTTTGTTGTGTGGCTTCTTATCATGGGTTTCTTAACAACTCAAGTTCTTGTCGTTATTTCATCCCAGCTTTTACTTGTGGCTTTCATGTTTGGCAACACAGCTAAGACTGTATTTGAAGCTATTATATTTGTTTTTGTGATGCATCCGTTTGATGTCGGTGACCGCTGTGTCATTGATGGTGTTCAGATTTTCTATCCAAATTCAGTTCTCGCAACCAAGCCAATCAGTAACTTCTACAGGAGTCCGGAAATGAGTGATTCTGTTGAATTTGCTGTTGATGTTTCTACATCTATTGAAAGTATTGGAGCTTTAAAGGCCAAGTTAAAAGCATATTTGGAGAGTAAGCCTCAACACTGGCGACCCAACCATAGTGTGTTGGTTAAGGATATTGAGAATGTAAATAAGATGAATATGGGTCTATGTGTCACTCACACCATAAATTTTCAGAACTATGGGGATAGGAACAGCCGAAGATCTGAATTAGTCCTGGAGTTAAAGAAAATTCTTGAAGATCTTAACATTAAATATCATCTGCTGCCACAAGAAGTTCATCTCAGTTGTGTAAGTTCACAAGACTCAACTGCACAGACATTTTGA 2010 0.3881 MEKERGCVAGTEVTKNEVVLRISDAEEAMYAKKEQIDSTSFPVAESSSLSPQHNSHKGTGFTDELTELENVTNKCQVSTELVTTTTKRNSPNNNIPEATFVILRTPLLGTQGEEEDDDEEVYKTAHIEMSKRFGKRWRVLGFVEWFAFFCIMGFFITSLAVHKLQHREIWSLELWKWCVLGLVILCGRLVSEWFINLLVFMIERNFLFKKKVLYFVYGVKKSVQGFIWLSLVLLTWGLFFHLGVKRTRKVTRILNYITRALASCLMGAVIWLAKTLLIKLLDSKFQSTRFFDRVQESIFHQYILRTLSGPPLMEKVGKTSSSGRLNFKTVINEKEAQVIDVERLKKMKQEKVSAWTMKGLINVIRSSGLSTISYTPKNADDDQSDQKDNEITNEYIEKDDLLQFMKNEEVENVLPLFEREVETGRIKRKFLKNWLVKVYIKRRSLVHSLKDTKTAVDDLNMLASVFVLIVIFVVWLLIMGFLTTQVLVVISSQLLLVAFMFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQIFYPNSVLATKPISNFYRSPEMSDSVEFAVDVSTSIESIGALKAKLKAYLESKPQHWRPNHSVLVKDIENVNKMNMGLCVTHTINFQNYGDRNSRRSELVLELKKILEDLNIKYHLLPQEVHLSCVSSQDSTAQTF 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0938 669 PIRSF Memb_At2g17000 392 535 IPR016688 -
Aed4g0938 669 PIRSF Memb_At2g17000 530 668 IPR016688 -
Aed4g0938 669 PIRSF Memb_At2g17000 9 395 IPR016688 -
Aed4g0938 669 Pfam Mechanosensitive ion channel 530 646 IPR006685 GO:0016020|GO:0055085
Aed4g0938 669 Coils Coil 331 351 - -
Aed4g0938 669 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 14 661 IPR016688 -
Aed4g0938 669 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 14 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0938 Aed-Chr4 8579488 8583542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0938 88 657 Mechanosensitive Ion Channel Family AT5G12080 47.742 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0938 K22048 - gmx:100777332 1018.45