Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0936 ATGGGTGATGTTCTAAGCCCCTTCACAATCTCATCCCCTCCTCCACCCTCTTCTCCATTAACCAGGAACAACAGCATGCCCATGTTGTACTACGGTCTTGTTGTTGTGGGAACCGCGGCCATAGTGCTAGCCATATACAACCTCATCCTCCTCAAACGGAGCCACCAGCATCGGGCGCGGCTGCAGGGCCAAGACAGAGATATCGAACGAGTTGTGGTTGTTCCCGACAGGACAAGGAGCTTTGAGGACAGCAGCCAGCATAGGAACCTGCTCTCAAGCTTCAAGTACAAGAAAGAAGTGGTGGCTGCCAAAATAGAAGAGGATGATGAATTCGAGTGCTCCGTTTGCTTGTCTGTTTACGAAGAAGGAGAAGAGGTGAGGAAGCTTCCTCAGTGCAAGCACTATTTCCATGTTCTTTGCATAGATATGTGGCTCTACTCCCACTTGGATTGCCCGATTTGTAGAACACCGGTTGTCGGGCCTTTGTGTCCGGTGGAGGTGGAGAATTCTCATGATGGGATGATGGAATCCGGTGGCATGGTTGGTGGTGGCATCTCTCTAGATTGA 567 0.5079 MGDVLSPFTISSPPPPSSPLTRNNSMPMLYYGLVVVGTAAIVLAIYNLILLKRSHQHRARLQGQDRDIERVVVVPDRTRSFEDSSQHRNLLSSFKYKKEVVAAKIEEDDEFECSVCLSVYEEGEEVRKLPQCKHYFHVLCIDMWLYSHLDCPICRTPVVGPLCPVEVENSHDGMMESGGMVGGGISLD 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0936 188 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 12 165 - -
Aed4g0936 188 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Aed4g0936 188 SMART ring_2 113 154 IPR001841 -
Aed4g0936 188 MobiDBLite consensus disorder prediction 1 22 - -
Aed4g0936 188 SUPERFAMILY RING/U-box 101 159 - -
Aed4g0936 188 Pfam Ring finger domain 112 155 IPR001841 -
Aed4g0936 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 160 IPR013083 -
Aed4g0936 188 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 12 165 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0936 Aed-Chr4 8561819 8562385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0936 33 165 C3H Transcription Factor Family AT5G17600 32.847 4.96e-18 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0936 - - gmx:102668279 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2138 6 23803537 23804058 Aed4g0936 4 8561819 8562385 PCT