Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0930 ATGCTTAACTTGGACCCAACACTTCAACTAATTGTTGCTTCTTCATACCTTACCAGATCCCAAAGAATTTTTGTAATGGACATTGTAGATGGGGAAATAAAAAAAGGTCATGATCTGATTCTAAGTGATGACTATATTGAAGGTTACATGAAACCATTTCTCTTCTTGAATCTTCCCGACACTGAGTTCAGTTCTTCACAACTTGATTGCAATCACTCAATGGCTCATTCTTCTTATGCTTACGACGATCCAATTTATGCTTATGGACCACAGGTTATTAGTCAACCCCAAATGTTGTTACCCCAGATGTTTGGACTAGGATCCACCAGAGTGCCATTACCATTTGATTTCACAGAAGATGGACCAATTTATGTCAATGCAAAACAATACCATGGGATACTGAGAAGGCGACAGTCGCGAGCGAAGCTTGAGGCTCAGAACAAACTTATCAAATTTCGTAAGCCATATCTTCACGAGTCTCGGCACCGCCATGCGTTGAATAGGGTTAGGGGATCCGGGGGGCGATTTCTCAGCTCCAAACAGCTTGCACAGTCTAAGGCAGAATTCATCACTGGTGCACATTCTGGTTCTGACCCTACCAACATTTATCAAAAGGAACATCCATCAGAAATGGAAAGTCATTCCTCAAAAGCAGTAGATAATAATGCATCTTCCAGCACAACCTGCACCGACCGGCCATGTTTATCCAGCAACAACAACGTCAATTTCCGGCAGCAGGAGGGCATGTTTCTGGGGAATTCTGCAAACATGGGTGGAGCACCACCACAGTGCAGCGGGGGACTCACCTTTGGTGGAACAAAGCAACGCGCATCAGTTGTCCGGTGA 846 0.4433 MLNLDPTLQLIVASSYLTRSQRIFVMDIVDGEIKKGHDLILSDDYIEGYMKPFLFLNLPDTEFSSSQLDCNHSMAHSSYAYDDPIYAYGPQVISQPQMLLPQMFGLGSTRVPLPFDFTEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKFRKPYLHESRHRHALNRVRGSGGRFLSSKQLAQSKAEFITGAHSGSDPTNIYQKEHPSEMESHSSKAVDNNASSSTTCTDRPCLSSNNNVNFRQQEGMFLGNSANMGGAPPQCSGGLTFGGTKQRASVVR 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0930 281 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 46 266 IPR001289 GO:0003700|GO:0006355
Aed4g0930 281 MobiDBLite consensus disorder prediction 215 237 - -
Aed4g0930 281 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 122 176 IPR001289 GO:0003700|GO:0006355
Aed4g0930 281 ProSitePatterns NF-YA/HAP2 subunit signature. 124 144 IPR018362 GO:0003677|GO:0016602
Aed4g0930 281 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 46 266 - -
Aed4g0930 281 SMART cbf3 118 179 IPR001289 GO:0003700|GO:0006355
Aed4g0930 281 MobiDBLite consensus disorder prediction 191 237 - -
Aed4g0930 281 Gene3D - 119 181 - -
Aed4g0930 281 ProSiteProfiles NF-YA/HAP2 family profile. 119 179 IPR001289 GO:0003700|GO:0006355
Aed4g0930 281 PRINTS CCAAT-binding transcription factor subunit B signature 153 176 IPR001289 GO:0003700|GO:0006355
Aed4g0930 281 PRINTS CCAAT-binding transcription factor subunit B signature 122 144 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0930 Aed-Chr4 8484527 8488838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0930 73 185 CCAAT-HAP2 Transcription Factor Family AT1G17590 60.000 2.17e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Aed4g0930 CBFB_NFYA 1.7e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0930 K08064 - gmx:100793856 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0930 4 8484527 8488838 Aed4g0930 4 8484527 8488838 ECH