Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0929 ATGGACGGTGGAGGACACTACAACCCCCGCACCGTCGAAGAGGTTTTCCGGGACTTCAAGGGCCGCCGGACCGGCATGATTAAAGCCCTCACTACTGATGTTGAGGAATTTTACCAGCAGTGCGATCCTGAAAAGGAGAATCTATGTCTGTATGGATTCCCCACTGAACACTGGGAAGTTAATTTGCCTGCCGAAGAAGTTCCTCCAGAACTTCCCGAACCTGCATTGGGCATAAATTTTGCTAGGGATGGGATGGAAGAAAAGGATTGGCTATCTTTAGTTGCTGTTCACAGTGATGCATGGCTACAATCAGTAGCTTTCTACTTTGGGGCAAGATTTGGTTTTGATAAAGCTGACAGGAAACGTCTGTTCACTATGATTAATGATCTGCCTACAATATTTGAGGTTGTAACTGGATCTGCAAAGAAACAGGCAAAGGAGAAGCCATCAGACCTCAATGGCAACAAATCAAAGTCTGGTTCAAAAGGGCGAGCATCTGAGCCCCCAAAGTATTCAAAGCCGGTAAAGGATGAGGACGAGGGATTGGACGAGGAAGATGATGATGAACATGGGGAGACCTTGTGTGGTGCATGTGGGGAGAACTACGCATCTGATGAGTTCTGGATTTGTTGTGACCTGTGTGAGAAGTGGTTTCATGGAAAGTGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATCAAACACTACAAGTGCCCCTCATGCAGCAGCAGTGGTGGCGGCGGCAGCAATAAGAGAGCAAGGCCTTGA 768 0.4831 MDGGGHYNPRTVEEVFRDFKGRRTGMIKALTTDVEEFYQQCDPEKENLCLYGFPTEHWEVNLPAEEVPPELPEPALGINFARDGMEEKDWLSLVAVHSDAWLQSVAFYFGARFGFDKADRKRLFTMINDLPTIFEVVTGSAKKQAKEKPSDLNGNKSKSGSKGRASEPPKYSKPVKDEDEGLDEEDDDEHGETLCGACGENYASDEFWICCDLCEKWFHGKCVKITPARAEHIKHYKCPSCSSSGGGGSNKRARP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0929 255 ProSiteProfiles Zinc finger PHD-type profile. 192 244 IPR019787 -
Aed4g0929 255 PANTHER CPG BINDING PROTEIN 3 255 IPR045104 GO:0006355|GO:0042393
Aed4g0929 255 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Aed4g0929 255 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 3 255 - -
Aed4g0929 255 SUPERFAMILY FYVE/PHD zinc finger 184 248 IPR011011 -
Aed4g0929 255 SMART PHD_3 194 242 IPR001965 -
Aed4g0929 255 ProSitePatterns Zinc finger PHD-type signature. 195 241 IPR019786 -
Aed4g0929 255 Pfam PHD-finger 195 243 IPR019787 -
Aed4g0929 255 MobiDBLite consensus disorder prediction 144 189 - -
Aed4g0929 255 CDD PHD_AL_plant 194 241 IPR044104 -
Aed4g0929 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 243 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0929 Aed-Chr4 8477251 8480823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0929 1 254 Alfin-like Transcription Factor Family AT3G42790 74.609 3.93e-122 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Aed4g0929 Alfin 6.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0929 - - gmx:100170699 464.151