Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0923 ATGAATCATCATCAATTACGAGTCTTCTTGGTGGTTAGATTCAAAATTGAACTTGTCATAGAGAAGAGGGCTTATGAGGATAGCAGTTATAAGATTCTAGAGGATAAGGCTATTTTGCTACAAAGCAAACTAAAAAAACCTATGGAGGAAATAACTTCAACGGTTGCAGTGCCATTCACACTTGGGAATTTAATGCAAAAAGAGCCAGCAGTGACAACCCACATGGAGATAACTGGTCTCAAACTCAGGGCAAATAATACAACATCATCATCTTTGATATTAAATCCTTCAATTGAAAGTGAAAAGCACACAGATATTAAAGTGTCTGCAGAGGCAGAGGAGAATAATCTGGTTGTTGGAGCTGAACTTGTCTCAGAAATGGTTAGTCAAGGAAACAATACTTGTTTATATGCTGCTGAAGGTCTAAACCAAGGAAGAAAAGAAAATGAATCATTGTTGATTGTTAAGGATTTTCAGTGTGAGCATATCTCTCAATCTTCTTCTGTTTTGAGGACTAATTGTTGTGAAAGAAACTCACCTGTTACCATGAAGGTCGATGATAGCATAGAGATGGAAGATGCTGTTGCTGTTAAGCCTCATCTTTTTCAAGTCACTCCAAGGATGTTAATGGATGATCATGTTGCGAATTACTGCCGGGAACATCTTCATTTAGTGTTGGTTGATGAGATAGAAGCTGCTGCACAATCAAGTTTGGATGGAAATTGGGAGGACCAATGGAAGAAAGCATTCTCCAATTGTTTCAACAAAGTAGATGATGAGGTTGGAGGAGCTGGTGAAGGTAATGGTGCAAGTGCAAGTGCAAGTGTTGTTGAACCTCTTGCTTCTGAGACTGTTGGCTCCACTGCTGTGGTTGCCATTTTGACTCAAACTCACATAATAGTTGCAAACTGTGGAGATTCAAGAGCTCCAAATAGAGAAGATGAATGGGAAAGGATAGAAGCTGCAGGAGGAAGGGTCATACAATGGAATGGGTACCGAGTTCTAGGTGTTTTGGCAGTGTCAAGGTCTATAGGTGATAGGTACTTGAAACCATGGGTAATTCCAGAGCCAGAAGTGAAGTGTGTCCAACGAGACAAAAGCGACGAGTGCCTCATTCTAGCCAGTGATGGTTTATGGGATGTGATGACAAACGAAGAAGCCTGTGAGATTGCACGAAAGAGAATCCTTCTTTGGCATAAGAAGAATGGCAACAACAACAACAACTCTTCATCATCAGAACAAGGCCAAGAAGGAGTTGTTGATCCTGCGGCAGCAGCAGCAGCAGCTCAGTATGCTGCTGAGTATCTCTCTAGACTTGCCCTCCAAAGAGGAACCAAAGATAACATCTCTATCATTGTTGTAGACTTGAAACCCCAGAGAAAAATCAAGAAAAAAGAATAA 1401 0.4083 MNHHQLRVFLVVRFKIELVIEKRAYEDSSYKILEDKAILLQSKLKKPMEEITSTVAVPFTLGNLMQKEPAVTTHMEITGLKLRANNTTSSSLILNPSIESEKHTDIKVSAEAEENNLVVGAELVSEMVSQGNNTCLYAAEGLNQGRKENESLLIVKDFQCEHISQSSSVLRTNCCERNSPVTMKVDDSIEMEDAVAVKPHLFQVTPRMLMDDHVANYCREHLHLVLVDEIEAAAQSSLDGNWEDQWKKAFSNCFNKVDDEVGGAGEGNGASASASVVEPLASETVGSTAVVAILTQTHIIVANCGDSRAPNREDEWERIEAAGGRVIQWNGYRVLGVLAVSRSIGDRYLKPWVIPEPEVKCVQRDKSDECLILASDGLWDVMTNEEACEIARKRILLWHKKNGNNNNNSSSSEQGQEGVVDPAAAAAAAQYAAEYLSRLALQRGTKDNISIIVVDLKPQRKIKKKE 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0923 466 PANTHER ALPHABET, ISOFORM E-RELATED 213 466 - -
Aed4g0923 466 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 213 466 - -
Aed4g0923 466 ProSiteProfiles PPM-type phosphatase domain profile. 177 456 IPR001932 -
Aed4g0923 466 SUPERFAMILY PP2C-like 188 458 IPR036457 -
Aed4g0923 466 SMART PP2C_4 172 454 IPR001932 -
Aed4g0923 466 Pfam Protein phosphatase 2C 201 449 IPR001932 -
Aed4g0923 466 CDD PP2Cc 190 456 IPR001932 -
Aed4g0923 466 Gene3D - 165 466 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0923 Aed-Chr4 8415285 8421910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0923 48 465 PP2C-type Phosphatase Gene Family AT4G26080 40.167 5.75e-99 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0923 K14497 - gmx:100803764 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0923 4 8415285 8421910 Aed4g0923 4 8415285 8421910 ECH
Aed6g2123 6 23699585 23705558 Aed4g0923 4 8415285 8421910 PCT