Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0914 ATGGGCCGGAGCCCAAGAACGGTGGATTCTCAGATCTCATGGCGGTTTGACCCATGCCCGTTGACTGGGTGCAAATTCCCACTCACTTCCGCAAAAAAACGCATTGTGTTTGTTCTCTCTTTCCGCGGCGTAGATCTGAGCAGTTTGGGAAACCCTAACTGCTCTTCGCTTTTTCTCCTTCTCCGATCAACCAACTTTTTCATCGCGTTAAGCTCTGGTTTGTTAGCTTCTCTTCGTTTTAAACCCTACAAACTGATGGCAGGACTTGCACCTGAGGGGTCACAGTTTGATGCTCGTCAATATGATAACAAGATGACTGAGTTGCTTACGTCTGATGGACAGGACTTCTTCACATCCTATGATGAGGTTTATGACAGTTTTGATGCAATGGGCTTGCAAGAGAATCTCCTGAGAGGCATTTATGCATATGGTTTTGAGAAGCCATCAGCTATCCAGCAAAGGGGAATAGTTCCATTCTGCAAGGGACTTGATGTTATACAACAAGCCCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCTGGAATTCTGCAGCAACTTGACTATAGTGTGACCGAATGCCAAGCCTTGGTTTTAGCACCAACTCGGGAGCTTGCTCAGCAAATTGAAAAGGTTATGCGGGCACTTGGAGATTATCTTGGTGTGAAGGTGCATGCATGTGTGGGAGGTACCAGTGTTCGTGAAGATCAACGCATTCTATCAAGCGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGCCGACAGTCACTTCGGCCAGACTACATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCATCCCGTGTTTTAATAACTACTGATCTTTTGGCCCGTGGTATTGATGTCCAGCAAGTGTCTTTAGTTATAAATTATGATCTCCCAACGCAGCCTGAGAACTATCTCCATCGTATTGGACGTAGTGGAAGGTTTGGTAGGAAAGGTGTTGCCATTAACTTTGTCACAAAGGATGATGAAAAAATGCTGTTTGACATTCAGAAGTTTTACAATGTGGTAATTGAGGAGCTGCCTTCAAATGTTGCTGAACTCCTTTGA 1158 0.4465 MGRSPRTVDSQISWRFDPCPLTGCKFPLTSAKKRIVFVLSFRGVDLSSLGNPNCSSLFLLLRSTNFFIALSSGLLASLRFKPYKLMAGLAPEGSQFDARQYDNKMTELLTSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSVTECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVVIEELPSNVAELL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0914 385 PANTHER - 91 287 - -
Aed4g0914 385 PANTHER - 286 378 - -
Aed4g0914 385 SMART ultradead3 144 338 IPR014001 -
Aed4g0914 385 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Aed4g0914 385 Gene3D - 95 307 IPR027417 -
Aed4g0914 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 381 IPR027417 -
Aed4g0914 385 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 286 378 - -
Aed4g0914 385 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 294 IPR027417 -
Aed4g0914 385 Pfam DEAD/DEAH box helicase 150 290 IPR011545 GO:0003676|GO:0005524
Aed4g0914 385 CDD SF2_C_DEAD 283 355 - -
Aed4g0914 385 SMART helicmild6 274 346 IPR001650 -
Aed4g0914 385 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Aed4g0914 385 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 329 IPR014001 -
Aed4g0914 385 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 186 385 IPR001650 -
Aed4g0914 385 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 91 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0914 Aed-Chr4 8315068 8318288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0914 281 363 Eukaryotic Initiation Factors Gene Family AT3G13920 91.566 3.91e-45 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0914 K03257 - gmx:100786735 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0914 4 8315068 8318288 Aed4g0914 4 8315068 8318288 ECH
Aed6g2115 6 23650340 23652742 Aed4g0914 4 8315068 8318288 PCT