Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0908 ATGAACTTTGGAAGTGTGTTTTCGGATTCAAACGACAGCAGCGGCGTGGCCACCAACAGCGGCGAGGCCTATAATTCGAGCGGCGGCGCCGACGACTTAGACGCCATCACGCCGCTGAGGCGACTCTCGGAGCAGCTGGGGTCAATAATATTGGACGACGCCGGCGGGGTTGACTTTTTCTCCGATGCGAAGATCGTGGCCGGAGACGGTCGGGAAGTGGCCGTGCACCGGTGCATTCTGGCGGAGAGGAGCGGCTTTTTCAAGAACGCGTTCTCCGGCGGCGGCGGTGTGATTCTCCGGCTGAAGGAGGTGGCCAAGGACTACGATGTTGGGTTGGAGGCGCTTGGGATTGTTCTGAATTATTTGTACAGTGGAAGAGTGATGAAGCCTTTGGCTCAAGGTTGTGTTTGTGTAGATGATTTGTGTTCACATTTTGGATGCATGCCTGCTGTGGATTTCTTGCTTCAGCTTCTCTATGCTTCCTCCACTTTTCAACTTCATGACTTGGTTGCTCTTTATCAGGGACATCTACTAGACATTATTCTTGACAAGGTGGCAATAGATGAGATTTTGGTGGTTCTATCGGTCGCAAACACATGTGGCAAAGTGTGTGAAAGACTTCTAGCAAGGTGCACTGAGATGATAGTTAACTCAGATGCTGACTTCACCAATCTTGAAAAGGCACTGCCACAACACTTGGTGAAACAAATCATGGACAAAAGAAGAGAATTGAACTTGTACATGCCCCAAAAAATTTTCAATTTTCCAAACAAACATGTCAACAGAATACACAGGGCACTGGACTCAGACGATGTGGAACTAGTGAGATTGCTTCTGAAAGAGGGTCACACAACTCTAGATGATGCCTGTGCACTCCACTATGCTGTTGCATACTGTGATGTGAAGACCACCACTGAGCTTCTTGATCTTGCTCTTGCTGATGTGAACCACAGAAACCATAGGGGATATAGCGTGCTTCACGTTGCGGCGATGAGGAAAGAGCCTAAGATTATTGTTTCTCTCTTGACAAAGGGGGCACAGCCTTCTGATCTCACTCTGGATGGGAGAAAGGCCCTTCAGATTTTGAAGCGTCTCACCAAAGCTGTGGATTATTATAGGTCCACTGAGGAAGGGAAGGTTTCTTGCAATGACAGGTTGTGCATTGAGATATTGGAGCAAGCTGAGAGAAGAGAGCCTTTGCTTGTTGGACTGGCGAAAGTGTTGTTCCCCATGGAAGCTAAGGTTGTTATGGATATTTCTCAAGTTGATGGCACATCTGAGTTTCCATCAACAGACATGTACTGTCCAAATATTAGCGATTGCCAGAGGAAAACTGTGGACTTAAACGATGCACCTTTCAGAATGAAGGAAGAACATCTAGTTAGGTTGAGAGCACTCTCTAGAACCGTGGAGTTGGGGAAACGCTTCTTCCCTCGATGCTCAGAAGTGTTGAACAAGATCATGGATGCTGATGACCTATCTCAGCTTGCATGTATGGGTGATGACAGTCCTGAAGATAGACTAAGAAAGAGAAGAAGGTATGTGGAGCTCCAAGAAGTTCTGAATAAGGTCTTCAATGAGGACAAGGAGGAATATGATAGGTCTGCCATGTCATCATCATCCTCTTCTACATCATTGGGAGTAGTGAAACCTAATGCCAATCTAGCCATGAATAAGTAG 1680 0.4696 MNFGSVFSDSNDSSGVATNSGEAYNSSGGADDLDAITPLRRLSEQLGSIILDDAGGVDFFSDAKIVAGDGREVAVHRCILAERSGFFKNAFSGGGGVILRLKEVAKDYDVGLEALGIVLNYLYSGRVMKPLAQGCVCVDDLCSHFGCMPAVDFLLQLLYASSTFQLHDLVALYQGHLLDIILDKVAIDEILVVLSVANTCGKVCERLLARCTEMIVNSDADFTNLEKALPQHLVKQIMDKRRELNLYMPQKIFNFPNKHVNRIHRALDSDDVELVRLLLKEGHTTLDDACALHYAVAYCDVKTTTELLDLALADVNHRNHRGYSVLHVAAMRKEPKIIVSLLTKGAQPSDLTLDGRKALQILKRLTKAVDYYRSTEEGKVSCNDRLCIEILEQAERREPLLVGLAKVLFPMEAKVVMDISQVDGTSEFPSTDMYCPNISDCQRKTVDLNDAPFRMKEEHLVRLRALSRTVELGKRFFPRCSEVLNKIMDADDLSQLACMGDDSPEDRLRKRRRYVELQEVLNKVFNEDKEEYDRSAMSSSSSSTSLGVVKPNANLAMNK 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0908 559 PANTHER REGULATORY PROTEIN NPR2 10 401 - -
Aed4g0908 559 Pfam BTB/POZ domain 59 171 IPR000210 GO:0005515
Aed4g0908 559 PANTHER REGULATORY PROTEIN NPR3 402 557 IPR044292 GO:0009862|GO:2000022|GO:2000031
Aed4g0908 559 SMART ANK_2a 321 350 IPR002110 GO:0005515
Aed4g0908 559 SMART ANK_2a 258 288 IPR002110 GO:0005515
Aed4g0908 559 ProSiteProfiles BTB domain profile. 61 131 IPR000210 GO:0005515
Aed4g0908 559 SUPERFAMILY Ankyrin repeat 254 363 IPR036770 -
Aed4g0908 559 SUPERFAMILY POZ domain 58 179 IPR011333 -
Aed4g0908 559 Pfam NPR1/NIM1 like defence protein C terminal 363 401 IPR021094 -
Aed4g0908 559 Pfam NPR1/NIM1 like defence protein C terminal 402 544 IPR021094 -
Aed4g0908 559 MobiDBLite consensus disorder prediction 1 23 - -
Aed4g0908 559 MobiDBLite consensus disorder prediction 536 559 - -
Aed4g0908 559 Gene3D Potassium Channel Kv1.1; Chain A 35 216 IPR011333 -
Aed4g0908 559 SMART BTB_4 61 181 IPR000210 GO:0005515
Aed4g0908 559 ProSiteProfiles Ankyrin repeat profile. 321 353 IPR002110 GO:0005515
Aed4g0908 559 PANTHER REGULATORY PROTEIN NPR2 402 557 - -
Aed4g0908 559 PANTHER REGULATORY PROTEIN NPR3 10 401 IPR044292 GO:0009862|GO:2000022|GO:2000031
Aed4g0908 559 MobiDBLite consensus disorder prediction 531 559 - -
Aed4g0908 559 Pfam Ankyrin repeats (3 copies) 264 348 IPR002110 GO:0005515
Aed4g0908 559 Gene3D - 230 371 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0908 Aed-Chr4 8256410 8260810 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed4g0908 NPR1_like_C 1.8e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0908 K14508 - gmx:100800032 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0908 4 8256410 8260810 Aed4g0908 4 8256410 8260810 ECH