Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0903 ATGGAAAGTATCTTCTCTCTCTCAGTAGCTGCCAGGGCTGATTTTATCCAATTTCTGGTGCAGTCTTTTGGCTGCAGCTACATTTGTCTATGGGCATATGATTCCAATATTTCACCCAATCGTTTGAGGTTCTTGGATGGTATCTACAATGTTAGGAACAACCAATTACCAAGCTCTAGTTTGGGGACTGTGGCACAACAGCTTTTCAGTCAGTTCCGGACTTTGACATTTGATGTCAATGATGACCGTGTTCCTGGACTAGCTTTTAGGAACCAGCGTCCCTACCTAGAGCTCCAACAATTGGAACTTCTTAGACTAGCATCCACACAAATACAAATACAATTCTTTCAGGAGGCAAGGATTAAGGTAGACATTCAAACAGCACTTAGAAGCTTGTTTCCTGAAGATTTTTCCACTAGAGTAGTACAGTCCCAGCATCAACAAATAGATCAAAACCCTCCTACATCATCTTCATCTTCTCTAAGATCAATATCCACAGGTAGCCCTGAATACTCATCTCTTCTGTTCAGTAGTAGCACTATTCCAGGCTCATCATCATCATCAAGAGTAGCAGCACTAGTGCCACCAATGCAGCCAGTGCCAAACACAACTAGCCCTCACCAATTACAAGCCATTAATCAAGCATTGGCACAACAACAACAAGTGATGATCCCTCTAACCCAATTCCCAACACAAGAAACTGAACATGATGCAATCATGAGAGCAATCCTTAATGTTATATCTCCAACAAGTACTTCTTCTCATAGTAATCAGCAGCACCACCAAAACTTATTGCCAAATTATCATAACAATGCTTCTGTGGTGCACCCTGATGCTAGTGCTTTCCAAAGGTATAGACTTGCAGAAATAGGCTCCAACATGGCCTCAAATTTCAGAAGGCAAAGCCTCATGAAGAGGTCTTTTGTGTTCTTTGGAAACTTGAACTTTATGAGAATGAGAGAACGTGTTCAAGCAGCAGCAACAACGTCCCGTCCCACCAATACTCAGCTGCATCATATGATATCAGAGAGAAGAAGGCGTGAGAAACTGAACGAGAATTTTCAAGGACTTAGAGCACTTCTTCCTCCTGGAACAAAGAAAGACAAAGCGTCTATACTAATAGCAGCAAAGGATACACTGAGCTCTTTGATGGCTGAAGTTGATAAACTAAGCAAAACAAATCAAGGGTTGACGTCACTTTTGCCACCGCCCAAAGAATCTACAACTGATCAAGAAACAAAGGTGGCTATTAGTTTATCACCAAATGAAAGATTAAGTGTCCGAATTTCTTCACATGTACCCGAATCATCATCAAGCTCATCATCAGAAGAGAGAATGGTGGAGTTGCAAGTGAACGTGAGAGGACAAATTTCTCAAATTGATTTATTAATCGGATTATTGGAATTCTTAAAAAAGGCTCATAACCAAGTTAGCTTGGTTTCCATGGACGCAAATAGCCACATTGCAGAAGGGAATAATAATGCAGCACTTCATCAACTAAACTTCAGATTGAGGATTGGAAGTGAATGGGACGAGTCTGGCTTCGAGGAAGCAGTGAGAAGAGTTGTTGCTGACTTGGCACACTACCAATTGGACCAATAA 1602 0.4139 MESIFSLSVAARADFIQFLVQSFGCSYICLWAYDSNISPNRLRFLDGIYNVRNNQLPSSSLGTVAQQLFSQFRTLTFDVNDDRVPGLAFRNQRPYLELQQLELLRLASTQIQIQFFQEARIKVDIQTALRSLFPEDFSTRVVQSQHQQIDQNPPTSSSSSLRSISTGSPEYSSLLFSSSTIPGSSSSSRVAALVPPMQPVPNTTSPHQLQAINQALAQQQQVMIPLTQFPTQETEHDAIMRAILNVISPTSTSSHSNQQHHQNLLPNYHNNASVVHPDASAFQRYRLAEIGSNMASNFRRQSLMKRSFVFFGNLNFMRMRERVQAAATTSRPTNTQLHHMISERRRREKLNENFQGLRALLPPGTKKDKASILIAAKDTLSSLMAEVDKLSKTNQGLTSLLPPPKESTTDQETKVAISLSPNERLSVRISSHVPESSSSSSSEERMVELQVNVRGQISQIDLLIGLLEFLKKAHNQVSLVSMDANSHIAEGNNNAALHQLNFRLRIGSEWDESGFEEAVRRVVADLAHYQLDQ 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0903 533 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 1 526 IPR044658 -
Aed4g0903 533 SMART finulus 340 389 IPR011598 GO:0046983
Aed4g0903 533 CDD bHLH_AtbHLH_like 339 391 IPR045239 -
Aed4g0903 533 Gene3D - 333 403 IPR036638 GO:0046983
Aed4g0903 533 MobiDBLite consensus disorder prediction 143 165 - -
Aed4g0903 533 Pfam Helix-loop-helix DNA-binding domain 338 383 IPR011598 GO:0046983
Aed4g0903 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 399 IPR036638 GO:0046983
Aed4g0903 533 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 1 526 - -
Aed4g0903 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 334 383 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0903 Aed-Chr4 8209902 8216492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0903 12 528 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 37.500 1.39e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g0903 HLH 1.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0903 - - gmx:100807098 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0903 4 8209902 8216492 Aed4g0903 4 8209902 8216492 ECH
Aed6g2107 6 23587992 23590981 Aed4g0903 4 8209902 8216492 PCT