Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0893 ATGATAATGATACCAACTTATCGTTACTCAGGGTCTTCTTCTTCTTCTATTCCTATAGATCTTAATGAAGATCACACCCACCACCACCACCATTTCATTACAAACCATCAAGCCTCAGCTTCTTCATCTTCTTCTCTTTCTTATTCTTTTCTCTTCAATCCGGATCAAGATCAAGGAGAATCTTTCCACTGGGAATCAAATCACTTACAAAGTGATGAAGAGGCTGAGAAGACTGTTCCTTCTAAAAGTGGATCATGGGATGATCCAGTAGCAAAAAAGGATGAAAGCAGAAGTGATCTCAAGCTTAGGATTTGGAAGAAAGAAGATGGATGTGAAAATCTTCAAGGTGGTGATGATAGTTCAACGAAGTGTATGCCTTCAAAGATGAGAATCAGGAGAAGGATGATGGTGTCAGATGATGAAATGGCTTCTTATGATATAGCAGGCGTCTCTAACTCCAAGCAGATCAAGTATGAAGAGAAAAACCACCCTCCACTCTCACCTCTAGGAACTGATGATAGTAACTACAATTCTTCTTCAAACCACAGAAATATCATCACTGTTAGGGTTTGTTCTGATTGCCACACCACTAAGACCCCTCTCTGGAGAAGTGGACCAGAAGGTCCAAAGTCACTTTGCAATGCTTGTGGAATTCGACAAAGGAAGGCAAGACGTGCCATTGCTGCAGCAGCTGCAACAGCAAATGGAAGCAATAATAATCTGGTGGAGGCAGCTGAGAAATCTCAAGCGAAGAAGAAGAAGGGAAACAAGTTGCATAGCAAAAGGATGAAGAAGTCCAAAACTACTACTGAGGGTGCTGCACCACAGATGAAAAAGAAGCGAAAACTTGGAGGATACAACAACAAGTATAGAAAGAGTAGGTTTGGTGCTTTTGAGGATTTGACAGTGAGATTGAGCAAGAACTTGGCTCTGCAACAAGTTTTCCCTCAGGATGAGAAGGAGGCTGCAATCTTGCTCATGGCTTTGTCTCATGGCCTTCTTCATGGCTTTCCCACAGATCGTTATATTACTAATTAG 1038 0.4171 MIMIPTYRYSGSSSSSIPIDLNEDHTHHHHHFITNHQASASSSSSLSYSFLFNPDQDQGESFHWESNHLQSDEEAEKTVPSKSGSWDDPVAKKDESRSDLKLRIWKKEDGCENLQGGDDSSTKCMPSKMRIRRRMMVSDDEMASYDIAGVSNSKQIKYEEKNHPPLSPLGTDDSNYNSSSNHRNIITVRVCSDCHTTKTPLWRSGPEGPKSLCNACGIRQRKARRAIAAAAATANGSNNNLVEAAEKSQAKKKKGNKLHSKRMKKSKTTTEGAAPQMKKKRKLGGYNNKYRKSRFGAFEDLTVRLSKNLALQQVFPQDEKEAAILLMALSHGLLHGFPTDRYITN 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0893 345 MobiDBLite consensus disorder prediction 71 94 - -
Aed4g0893 345 Pfam GATA zinc finger 191 224 IPR000679 GO:0006355|GO:0043565
Aed4g0893 345 ProSiteProfiles GATA-type zinc finger domain profile. 189 221 IPR000679 GO:0006355|GO:0043565
Aed4g0893 345 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 187 225 - -
Aed4g0893 345 CDD ZnF_GATA 190 218 IPR000679 GO:0006355|GO:0043565
Aed4g0893 345 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 3 336 - -
Aed4g0893 345 SMART GATA_3 185 236 IPR000679 GO:0006355|GO:0043565
Aed4g0893 345 MobiDBLite consensus disorder prediction 246 286 - -
Aed4g0893 345 MobiDBLite consensus disorder prediction 160 180 - -
Aed4g0893 345 ProSitePatterns GATA-type zinc finger domain. 191 216 IPR000679 GO:0006355|GO:0043565
Aed4g0893 345 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 3 336 - -
Aed4g0893 345 MobiDBLite consensus disorder prediction 1 22 - -
Aed4g0893 345 Gene3D - 189 226 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0893 Aed-Chr4 8082934 8085369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0893 48 336 C2C2-Gata Transcription Factor Family AT4G26150 32.602 3.88e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aed4g0893 GATA 1.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0893 - - gmx:100780875 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0893 4 8082934 8085369 Aed4g0893 4 8082934 8085369 ECH
Aed6g2093 6 23486590 23487883 Aed4g0893 4 8082934 8085369 PCT