Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0888 ATGGAAGATGATGAGGGATGCATCACAGGTCTCAGCCTTGGGCTTGGAATAATGGGAGGGAATCATCATGTGCCAAAGAAGGAGATGAATAAACAGAAGAAAGTTCCTTGCTTGGACCTATCATTTGAGCTTTTTTGTCCTAAGGGGGAAGAAGAAGAAGAAGAACAAGAAAAAGAAAAACAAGAAGCCATTGATCAACAACAACATGATGATTATGATAAGGCAAAAGGGTCGTCGTTGTTCTGTTTGAAGCACCCAAATGAAACAAGCCCTGATGATGATGATAGCAACAATAACAGCAACAATAATGGCAGCAGCAGAAAGAAACTGAAGCTCACAAAGGAGCAATCAGCCACCCTTGAAGATATTTTCAGGCTGCATAGCACTCTTAACCCTGCACAGAAACAGGCACTTGCTGAGCAATTGAATTTAAAGCATAGACAGGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAGCTGAAGCAAACAGAGGTGGATTGCGAGTTTCTGAAGAAATGTTGTGAGAAACTAACAGATGAGAATCTAAGGCTGAAGAAGGAGTTGCAGGAACTGCGTGCACAACAAAAGATTGGACCAACACCACTGTACATTCAACTCTCCAAAGCCACAACCTTGACCATTTGTTCATCATGTGAGAAACTGTTGAAGAAGCCAAATGAAGAGAACAACAAAGGAGCCATTAACAAATTGAAGAACAGCACAGAGTTAGGAGGTATCTAG 747 0.4163 MEDDEGCITGLSLGLGIMGGNHHVPKKEMNKQKKVPCLDLSFELFCPKGEEEEEEQEKEKQEAIDQQQHDDYDKAKGSSLFCLKHPNETSPDDDDSNNNSNNNGSSRKKLKLTKEQSATLEDIFRLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENLRLKKELQELRAQQKIGPTPLYIQLSKATTLTICSSCEKLLKKPNEENNKGAINKLKNSTELGGI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0888 248 MobiDBLite consensus disorder prediction 93 107 - -
Aed4g0888 248 PANTHER - 8 236 - -
Aed4g0888 248 SUPERFAMILY Homeodomain-like 91 164 IPR009057 -
Aed4g0888 248 Gene3D - 98 168 - -
Aed4g0888 248 SMART HOX_1 105 167 IPR001356 GO:0003677
Aed4g0888 248 Pfam Homeobox associated leucine zipper 163 196 IPR003106 GO:0006355|GO:0043565
Aed4g0888 248 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT9 8 236 - -
Aed4g0888 248 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Aed4g0888 248 MobiDBLite consensus disorder prediction 48 112 - -
Aed4g0888 248 Coils Coil 162 196 - -
Aed4g0888 248 SMART halz 163 207 IPR003106 GO:0006355|GO:0043565
Aed4g0888 248 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Aed4g0888 248 Pfam Homeodomain 107 161 IPR001356 GO:0003677
Aed4g0888 248 Coils Coil 50 70 - -
Aed4g0888 248 MobiDBLite consensus disorder prediction 48 78 - -
Aed4g0888 248 CDD homeodomain 107 164 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0888 Aed-Chr4 8054466 8055724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0888 1 237 Homeobox Transcription Factor Family AT4G37790 45.693 2.33e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aed4g0888 Homeodomain 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0888 K09338 - gmx:100778922 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2081 6 23434274 23435645 Aed4g0888 4 8054466 8055724 PCT