Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0883 ATGGCTGTGGATATGATGGATGTTGTGGTTCCTCCCAGAACGACGAGGATGGAGGAGAATATAGCAATACAAGAAGCTGCTTCCGCTGGGTTAAAGAGCATGGAGCATCTCATAAGACTCCTCTCTCCTTCTCCTAATTGCAACAACTCTTCTTCTTCTTCTTCTTCGATTCACATCAACAACAACAACGTTAATCTTAACAACCTCGACTGCTCCGAAATAACCGACTTCACCGTTTCCAAGTTCAAACAGGTCATCAACCTTCTCAACCGCACCGGCCACGCCCGCTTCCGCCGCGCACCATCCCAAGCCCAAGCCCAGGCCCAACCAGAACCACAACCACAACCTCAAACCCAACAACAACAAGGTTTCACTTTGGATTTCGTTAAGCCCACCATTCTAAACTCAAAGCCCATCAACAAAGACGAGACTTTGACTCTCTCCACCACCTCCTCCTCCTTCATGTCCTCCGTCACCAACGACGCCAGCGTCTCCGACGGCAAGATCGGCCCTTTCCTCCCTCCCTCCGCCGCTAAACCCCCTCTCTCCACCGCCCATCGGAAAAAGTGCCGCGACGCCGCCGCCCTCTCCGCCAAACCCTCCTCCTGCCACTGCTCCAAGAAAAGGAAATCACGCGTGAAACGAACGATTCGTGTTCCGGCGATAAGCTCGAAGATCGCCGATATCCCATCGGACGAGTACTCGTGGAGAAAATACGGTCAAAAACCTATCAAGGGCTCACCTTTCCCTCGAGGGTACTACAAGTGCAGCACCGTGAGAGGGTGTCCGGCGAGGAAGCACGTGGAGCGAGCGCAAGACGACCCTAAGATGCTAATAGTGACGTACGAGGGTGAGCACCGTCACACGCTGCCCTTAACTGCCGCTGCCGGCGTTAGTTTCGGCCATTGA 909 0.538 MAVDMMDVVVPPRTTRMEENIAIQEAASAGLKSMEHLIRLLSPSPNCNNSSSSSSSIHINNNNVNLNNLDCSEITDFTVSKFKQVINLLNRTGHARFRRAPSQAQAQAQPEPQPQPQTQQQQGFTLDFVKPTILNSKPINKDETLTLSTTSSSFMSSVTNDASVSDGKIGPFLPPSAAKPPLSTAHRKKCRDAAALSAKPSSCHCSKKRKSRVKRTIRVPAISSKIADIPSDEYSWRKYGQKPIKGSPFPRGYYKCSTVRGCPARKHVERAQDDPKMLIVTYEGEHRHTLPLTAAAGVSFGH 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0883 302 ProSiteProfiles WRKY domain profile. 225 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g0883 302 Gene3D WRKY domain 216 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aed4g0883 302 MobiDBLite consensus disorder prediction 97 121 - -
Aed4g0883 302 SMART WRKY_cls 230 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g0883 302 MobiDBLite consensus disorder prediction 102 121 - -
Aed4g0883 302 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 296 IPR044810 GO:0003700
Aed4g0883 302 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 13 296 - -
Aed4g0883 302 Pfam WRKY DNA -binding domain 232 288 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aed4g0883 302 Pfam Plant zinc cluster domain 187 228 IPR018872 -
Aed4g0883 302 SUPERFAMILY WRKY DNA-binding domain 228 291 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0883 Aed-Chr4 8014288 8016467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0883 1 288 WRKY Transcription Factor Family AT2G24570 51.057 2.84e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aed4g0883 WRKY 1.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0883 - - gmx:100127391 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0883 4 8014288 8016467 Aed4g0883 4 8014288 8016467 ECH
Aed6g2074 6 23391226 23395467 Aed4g0883 4 8014288 8016467 PCT