Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0876 ATGAGTAGTTTCCTGAACGGTTCTTCGCCGCAGCGGCGGAACGCGGTGGAGGGTGACATAGAGGCTGGTCCCTCCACTCGCCGCTCCGCCGACCTCGACGACAGCGATTTCTCCGATCCATTTGATATTGCCAGAACCAAGCACGCTCCGATTGATCGCCTCAGACGCTGGAGGCAAGCAGCGCTTGTGCTTAATGCCTCACGTCGATTTCGTTATACCTTGGACTTGAAAAAAGAAGAAGAGAAGAAGCAAATATTGAGAAAGATTAGGGCACATGCACAAGCAATTAGAGCAGCTTATCTTTTCAAAGCAGCTGGTGGGGGGGGAGGGAGTGAACCTACTAAACCTCCTCCGATCCCCATTGCTGGTGAATTTCCAATTGGACAAGAGCAACTTGCTTCAATTTCAAGGGAGCATGACACTGCCGCTCTGCAACAATATGGAGGGGTTGTGGGAGTATCAAATTTGTTGAAAACCAATTTAGAGAAGGGTATTCATGGTGATGATGCCGACTTACTAAAACGAAGGAATGCATTTGGTTCCAACAATTATCCTCGGAAGAAAGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGACCTGACCTTGGTTATTTTAATGGTAGCAGCAGCGGCTTCATTGGCACTTGGGATAAAATCTGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTCCGAGACCTAAATGAAGAGAAGAGAAATATACACCTGGAGGTTGTTAGAGGTGGTAGAAGAGTTGACATCTCTATATATGATATTGTTGCTGGAGATGTTATACCCCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTCTGATCATTGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGTAAAATTGTGCATAAGGATTCTAAGGATCCTTTTCTGATGTCTGGATGTAAAGTTGCAGATGGCAGTGGCACTATGCTGGTCACTGGTGTTGGTACCAATACTGAATGGGGGCTTCTAATGGCTAGCATCTCAGAAGATACTGGTGAAGAAACACCATTGCAGGTTCGCTTAAATGGTGTTGCTACTTTCATCGGTATTGTAGGACTCTCTGTTGCTGTTCTTGTCTTGATTGTGCTACTGGCTAGATATTTCTCTGGGCATACTGAAAACACAGATGGGTCGCCTCAATTTAAAGCAGGCAAGACTAAAGTTGGTGATGCTATTGATGGTGCAATAAAGATAATAACTGTTGCGGTTACCATCGTAGTGGTTGCAGTACCAGAGGGGCTACCATTAGCAGTTACTTTGACGCTGGCCTACTCGATGAGAAAAATGATGGCAGATAAAGCTTTGGTAAGGAGGCTTTCTGCCTGTGAGACCATGGGCTCTGCAACAACCATATGTAGTGATAAGACTGGCACATTGACAATGAATCTGATGACTGTGGTTGAGGCTTATGCGGGGGGTAAGAAAATTGACCCTCCTCACAAGCTGGAATCCTATCCCATGATTCGCTCTTTGCTCATTGAAGGTGTTGCACAGAACTCTAATGGCAGTGTTTATGTACCTGAGGGTGCTGCTAATGATGTCGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACAATGGGGAATAAAGCTTGGGATGAATTTTACGGCTGCTCGATCTGAATCGTCAATTATTCATGTTTTTCCATTCAATTCAGATAAAAAAAGAGGTGGAGTTGCAGTACAAACGGCTGACTCTAACATCCATATACACTGGAAAGGTGCTGCTGAGATAGTCCTAGACTGCTGTACAGGCTATATTGATGGAAATGACCAGCTGGTGGAGATGGATGATGAGAAGATGACATTTTTCAAAAAAGCTATTGAAGACATGGCTGCTGATAGTCTACGTTGTGTTGCCATTGCATATAGATCATATGAAAAGGAGAAAGTTCCAACTGATGAAGAACTACTTGCTCACTGGTCTTTACCGGAGGATGATCTTATTTTACTAGCTATTGTTGGTCTTAAGGATCCTTGCCGACCTGGTGTCAAAGAAGCAGTGCAACTTTGCCAAAAAGCTGGGGTTAAGGTGAAAATGGTCACTGGTGATAATGTGAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAATTCACTTGCTGAGGCTACAGAGCCAAACATCATTGAAGGCAAAACATTTCGTGCCTTGTCAGATGCACAGAGAGATGAAATTTGTGACAGGATATCGGTCATGGGACGGTCATCTCCGAATGACAAACTATTGCTAGTACAAGCATTGAGGAGGAAGGATCATGTTGTGGCTGTGACTGGGGATGGAACAAATGATGCTCCAGCACTTCATGAGGCCGATATAGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCAGCTCTAGTGATTAATGTTGTTGCTGCAGTTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGCTTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCAACTGAACCACCAACTGATCACCTCATGGATCGAACTCCAGTGGGTCGAAGAGAACCCCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCAATGTACCAAGTTGTTGTCTTGCTTGTACTCAATTTCCGAGGCATAAGCATACTGGGTCTGAGCCATGACACAAAAGACCATGCAATCAAAGTGAAGAATACTTTGATATTCAATGCATTTGTTCTCTGTCAAATATTTAATGAATTTAATGCTCGAAAACCAGATGAATTCAACATATTTAAAGGAGTCACGCGAAACTACCTTTTTATGGGTATAATTGGATTAACTGTTGTGCTTCAGATTGTCATCATTGAATTTCTTGGCAAGTTTACAACAACGGTGAAGCTTAATTGGAAGCAGTGGCTCATCTCTGTCGTTATTGGATTACTTGGTTGGCCTCTTGCTGTGGTTGGGAAATTGATACCAGTGCCAGCAACTCCCATCAACAACGTGTTCTCAAAATGTCGAAGAAGTTCTACAAAGAAGGAACCCGAGGAGGAACCCCAATAG 3267 0.4307 MSSFLNGSSPQRRNAVEGDIEAGPSTRRSADLDDSDFSDPFDIARTKHAPIDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGGGGSEPTKPPPIPIAGEFPIGQEQLASISREHDTAALQQYGGVVGVSNLLKTNLEKGIHGDDADLLKRRNAFGSNNYPRKKGRSFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAISDYKQSLQFRDLNEEKRNIHLEVVRGGRRVDISIYDIVAGDVIPLNIGNQVPADGILIIGHSLAIDESSMTGESKIVHKDSKDPFLMSGCKVADGSGTMLVTGVGTNTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVLVLIVLLARYFSGHTENTDGSPQFKAGKTKVGDAIDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNLMTVVEAYAGGKKIDPPHKLESYPMIRSLLIEGVAQNSNGSVYVPEGAANDVEVSGSPTEKAILQWGIKLGMNFTAARSESSIIHVFPFNSDKKRGGVAVQTADSNIHIHWKGAAEIVLDCCTGYIDGNDQLVEMDDEKMTFFKKAIEDMAADSLRCVAIAYRSYEKEKVPTDEELLAHWSLPEDDLILLAIVGLKDPCRPGVKEAVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILNSLAEATEPNIIEGKTFRALSDAQRDEICDRISVMGRSSPNDKLLLVQALRRKDHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVVVLLVLNFRGISILGLSHDTKDHAIKVKNTLIFNAFVLCQIFNEFNARKPDEFNIFKGVTRNYLFMGIIGLTVVLQIVIIEFLGKFTTTVKLNWKQWLISVVIGLLGWPLAVVGKLIPVPATPINNVFSKCRRSSTKKEPEEEPQ 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0876 1088 Pfam Ca2+-ATPase N terminal autoinhibitory domain 39 81 IPR024750 GO:0005516
Aed4g0876 1088 Gene3D - 198 1049 - -
Aed4g0876 1088 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 765 878 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0876 1088 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 431 513 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0876 1088 Pfam E1-E2 ATPase 268 468 - -
Aed4g0876 1088 Pfam Cation transporting ATPase, C-terminus 883 1059 IPR006068 -
Aed4g0876 1088 Pfam Cation transporter/ATPase, N-terminus 148 215 IPR004014 -
Aed4g0876 1088 CDD P-type_ATPase_Ca_PMCA-like 172 931 - -
Aed4g0876 1088 Gene3D - 171 366 - -
Aed4g0876 1088 Gene3D - 500 698 IPR023299 GO:0000166
Aed4g0876 1088 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1077 - -
Aed4g0876 1088 SMART Cation_ATPase_N_a_2 146 220 IPR004014 -
Aed4g0876 1088 SUPERFAMILY Calcium ATPase, transduction domain A 268 363 IPR008250 -
Aed4g0876 1088 Gene3D - 487 843 IPR023214 -
Aed4g0876 1088 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 497 695 IPR023299 GO:0000166
Aed4g0876 1088 PRINTS P-type cation-transporting ATPase superfamily signature 314 328 - -
Aed4g0876 1088 PRINTS P-type cation-transporting ATPase superfamily signature 798 817 - -
Aed4g0876 1088 PRINTS P-type cation-transporting ATPase superfamily signature 713 723 - -
Aed4g0876 1088 PRINTS P-type cation-transporting ATPase superfamily signature 691 702 - -
Aed4g0876 1088 PRINTS P-type cation-transporting ATPase superfamily signature 490 504 - -
Aed4g0876 1088 PRINTS P-type cation-transporting ATPase superfamily signature 822 834 - -
Aed4g0876 1088 PANTHER CATION TRANSPORTING ATPASE 27 1077 - -
Aed4g0876 1088 SUPERFAMILY HAD-like 488 903 IPR036412 -
Aed4g0876 1088 Pfam haloacid dehalogenase-like hydrolase 487 812 - -
Aed4g0876 1088 PRINTS Sodium/potassium-transporting ATPase signature 609 627 - -
Aed4g0876 1088 PRINTS Sodium/potassium-transporting ATPase signature 483 504 - -
Aed4g0876 1088 PRINTS Sodium/potassium-transporting ATPase signature 233 253 - -
Aed4g0876 1088 ProSitePatterns E1-E2 ATPases phosphorylation site. 492 498 IPR018303 -
Aed4g0876 1088 SFLD p-type atpase 472 850 IPR044492 -
Aed4g0876 1088 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 138 1062 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Aed4g0876 1088 SFLD Haloacid Dehalogenase 472 850 - -
Aed4g0876 1088 MobiDBLite consensus disorder prediction 24 39 - -
Aed4g0876 1088 Gene3D - 51 104 - -
Aed4g0876 1088 MobiDBLite consensus disorder prediction 1 39 - -
Aed4g0876 1088 SUPERFAMILY Calcium ATPase, transmembrane domain M 148 1062 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0876 Aed-Chr4 7872155 7889450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0876 1 1086 Primary Pumps ATPases AT5G57110 73.805 0.0 1607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0876 K01537 - gmx:100820121 1937.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2067 6 23345745 23363350 Aed4g0876 4 7872155 7889450 PCT