Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed4g0875 | ATGGGTGAGGCAAAGGCTTTGGTTCCGGAATCGGTGTTGAAGAAGGAGAAGAGGAACGAGGAGTGGGCTCTGGCGAAGAATCAGGAACACGCCGCCGCGAAGAAGAAGAGATTCGAAACGCGTAAGGTGATTTTCACCAGAGCCAAGCAGTACGCGAAGGAATATGAGGAGAAGTTGATTACGTTGAAGCGTGAGGCCAAGCTTAAGGGAGGGTTTTATGTTGAACCCGAAGCTAAGCTCTTGTTCATCATCAGGATTCGTGGTATCAATGCCATGGATCCCAAAACAAGGAAGATTCTGCAGCTTCTGCGTCTGAGACAGATTTTCAATGGAGTCTTTCTTAAAGTGAACAAAGCAACCGTGAATATGCTGCATAGGGTAGAGCCTTATGTTACCTTTGGGTACCCTAATTTGAAGAGTGTGAAGGAATTGATCTACAAGAGGGGCTATGGAAAAGTTAACAAGCAGAGAATTCCTCTGACAGACAACTCTATCATTGAACAGACTTTGGGGAAGCATGGGATCATTTGCATTGAAGATCTGATCCATGAGATCTTGACTGTTGGACCTCACTTCAAGGAGGCGAACAATTTTCTGTGGCCATTCAAGCTGAAAGCTCCCCTGGGTGGTTTGGAGAAGAAAAGAAACCATTATGTTGAAGGAGGTGATGCTGGCAACAGGGAGGATTACATAAATGAGCTTATTAGAAGGATGAATTAG | 720 | 0.4514 | MGEAKALVPESVLKKEKRNEEWALAKNQEHAAAKKKRFETRKVIFTRAKQYAKEYEEKLITLKREAKLKGGFYVEPEAKLLFIIRIRGINAMDPKTRKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTFGYPNLKSVKELIYKRGYGKVNKQRIPLTDNSIIEQTLGKHGIICIEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLEKKRNHYVEGGDAGNREDYINELIRRMN | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed4g0875 | 239 | Coils | Coil | 45 | 65 | - | - | |
| Aed4g0875 | 239 | PANTHER | 60S RIBOSOMAL PROTEIN L7-RELATED | 4 | 239 | - | - | |
| Aed4g0875 | 239 | PANTHER | 60S RIBOSOMAL PROTEIN L7 | 4 | 239 | IPR039699 | - | |
| Aed4g0875 | 239 | ProSitePatterns | Ribosomal protein L30 signature. | 99 | 131 | IPR018038 | - | |
| Aed4g0875 | 239 | SUPERFAMILY | Ribosomal protein L30p/L7e | 80 | 239 | IPR036919 | - | |
| Aed4g0875 | 239 | Pfam | Ribosomal protein L30p/L7e | 81 | 131 | IPR016082 | - | |
| Aed4g0875 | 239 | CDD | Ribosomal_L7_archeal_euk | 80 | 239 | IPR035808 | - | |
| Aed4g0875 | 239 | Gene3D | - | 80 | 185 | IPR036919 | - | |
| Aed4g0875 | 239 | Gene3D | - | 186 | 239 | IPR036919 | - | |
| Aed4g0875 | 239 | TIGRFAM | uL30_euk: 60S ribosomal protein uL30 | 9 | 239 | IPR005998 | GO:0000463|GO:0003735|GO:0022625 | |
| Aed4g0875 | 239 | Pfam | Ribosomal L30 N-terminal domain | 8 | 76 | IPR012988 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed4g0875 | Aed-Chr4 | 7854857 | 7857775 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed4g0875 | 1 | 239 | Cytoplasmic Ribosomal Protein Gene Family | AT2G44120 | 83.884 | 1.00e-149 | 415 |