Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0866 ATGGAGAATATTGGCGAAGAGTACAAGCATTACTGGGAGACCAACATGTTCCTCCAAACCGAAGAGCTTGACAGTTGGGGGTTGGACGAGGCCTTATCTGGGTACTACGATTCGAGTTCCCCAGATGGTGCTGCTTCATCTGCTGCATCTAAGAACATTGTTTCCGAGAGGAATCGGAGGAAGAAGCTCAATGAAAGGCTTTTTGCTCTTAGATCGGTCGTACCTAACATTAGCAAGATGGATAAGGCTTCGATTATTAAGGATGCTATTGAGTACATCCAGCACTTGCACGAGCAAGAGAAGATTATCCAAACTGAGATTATGGATCTTGAATCTGGGATGCCAAAAAAGAGTCAAAGCTATGATTTTGAGCAGGAACAGCTTCCTGTGGTTCTCAGGTCCAAGAAGAAGAGAACAGAGCACCTATATGACTCTGTTACTTCAAGAAACTCCCCGATTGAAGTCCTTGAGCTGCGAGTTACATACATGGGGGAGAAAACCGTTGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAAGTGTTCGAATCTTTGAAGCTGAAGATCATCACTGCCAACATCACTTCGTTTTCAGGGAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAAGAAGATAAAGATCATTTGCAGATAAAGATCAAGACAGCAATTGCAGCTCTTAATGACCCTCTAAGCCCTATGAGCATTTGA 732 0.4385 MENIGEEYKHYWETNMFLQTEELDSWGLDEALSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQTEIMDLESGMPKKSQSYDFEQEQLPVVLRSKKKRTEHLYDSVTSRNSPIEVLELRVTYMGEKTVVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANEEDKDHLQIKIKTAIAALNDPLSPMSI 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0866 243 Pfam Helix-loop-helix DNA-binding domain 54 97 IPR011598 GO:0046983
Aed4g0866 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 237 - -
Aed4g0866 243 SMART finulus 53 102 IPR011598 GO:0046983
Aed4g0866 243 Gene3D - 44 112 IPR036638 GO:0046983
Aed4g0866 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 96 IPR011598 GO:0046983
Aed4g0866 243 PANTHER TRANSCRIPTION FACTOR BHLH35 1 237 - -
Aed4g0866 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 112 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0866 Aed-Chr4 7721557 7727761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0866 1 214 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 64.384 1.05e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed4g0866 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0866 - - gmx:100817978 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0866 4 7721557 7727761 Aed4g0866 4 7721557 7727761 ECH
Aed6g2061 6 23297781 23302354 Aed4g0866 4 7721557 7727761 PCT