Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0865 ATGACGACGGAGCAAACCAAGCTGAGCGTGCTGTGCAGCCTCTTCACGTGGACGCAGCGGAGCAAGACGGCGGCGAAGAAGCGCGTCAAGCTCCGCAAGTTCCTGGATGCCTTCTGCACCGACCGCAACTTCTTCCCCGCCGTCCGCCTCCTTCTCCCAAACCTCGACCGCGAGCGCGGCTCTTACGGCCTCAAGGAGTCCGTCCTCGCCACCTCCCTCATCGACGCCCTCGGCATCTCCCGCGACTCCCCCGATGCCCTCCGCCTCATCAACTGGCGCAAGGGAGGCGCCTCCACCGGCGCCACCGCTGGCAATTTCGCCCTCGTCGCCTCCGAGGTGCTGCAGCGTCGGCAGGGGACGGCTTCGGGTGGATTGACGATAAGGGAGCTGAATGAGTTGCTTGACCGGTTGGCTTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACTAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGTATTAGTGAAAAGAGCATTTTTCACGAGTTCCACCCTGATGCAGAAGACCTGTTTAATGTTACCTGTGACTTAAAATTAGTATGTGAAAAGCTAAGGGATCGAAATCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGTGACCGCATTCAAATTCATAAAAATGGAACTGAGATACATTTCTTCTCAAGGCAAGTGCATGTGAACTTTATTGATCATTCTGAATATGCACATGCGATGTCAGAAATCATGATACAGAATGTTCTTGTAGATAGGTGCATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTTGAAATGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGGCATTTATGCTGTATCCTTGTATCTGAACATTTCAACGTGGCTAGATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCACCAAACATTGAAGGAACGGCATGAGATTCTGTGTAAAATTGTAAGGCCAGTGAAGGGTCATTTGGAAATTTTGGTACCTAATGCTGGTATCAACAGTCATATTTCTTCTGGTGAACCTTGTTGGTCATTTATTACTCATAATGTGGATGAAGTTGAGAGGTTTTTCAAAGAAACCATTGAAAATAGAGGTGAGGGAATTGTCTTAAAAGACCATAGCTCCAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAGTTGAAGCCAGAATACATTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGCTCTGGACGACGTGGAGGAGAGGTTTGCTCATTTTCCCTCTGCATTTGA 1446 0.4703 MTTEQTKLSVLCSLFTWTQRSKTAAKKRVKLRKFLDAFCTDRNFFPAVRLLLPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLINWRKGGASTGATAGNFALVASEVLQRRQGTASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRQVHVNFIDHSEYAHAMSEIMIQNVLVDRCILDGEMLVWDTSLKCFAEFGSNQEIGIYAVSLYLNISTWLDVAFDILYFGDTSVIHQTLKERHEILCKIVRPVKGHLEILVPNAGINSHISSGEPCWSFITHNVDEVERFFKETIENRGEGIVLKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGEVCSFSLCI 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0865 481 Pfam DNA ligase N terminus 9 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aed4g0865 481 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Aed4g0865 481 PANTHER DNA LIGASE 4 2 479 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Aed4g0865 481 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 62 481 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aed4g0865 481 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 447 - -
Aed4g0865 481 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 41 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aed4g0865 481 Gene3D DNA ligase/mRNA capping enzyme 221 448 - -
Aed4g0865 481 CDD Adenylation_DNA_ligase_IV 215 451 IPR044125 GO:0005524
Aed4g0865 481 ProSitePatterns ATP-dependent DNA ligase signature 2. 422 446 IPR016059 GO:0003909
Aed4g0865 481 Pfam ATP dependent DNA ligase domain 227 446 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aed4g0865 481 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aed4g0865 481 ProSiteProfiles ATP-dependent DNA ligase family profile. 345 481 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0865 221 480 Core DNA Replication Machinery Family AT1G08130 25.926 2.38e-21 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0865 K10777 - gmx:100816002 857.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0865 4 7703563 7715635 Aed4g0865 4 7703563 7715635 ECH