Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0861 ATTCACACTACAACAACAACAACTAAGGTAGAGTTTAACAGTGAAGGGAAAGAAAAGAAGCAGAATAAGAAGCATACCGTTGGTGATGGTGGTGATGCTTCGGGAACAACCACACCGGGTGATACAGAATCAATTAATATGCGGGATGTGGATAATTTAAATAACAAAGGATCTGGAAAATCTAGTTACTCACAGGAAAAGACTAAGTCCAAGCTAGTTTCCTCAAAAATCAAAACAAGTAGCACAAAACGCCGAGAGAAGAAACACAAAGTGAAGTCAAAATCTCATAAACACACAGCTGGTACAAACACATCAAAGAAGGCAATTAGTGATTCTTCTATCAACGCACCACTTGAGGACTCTTTGAATAAAAAAGTGATTAGTAGAAAACATCGGCATAAAACTGATGGGAAATTATCGCAGATGCTGTCATCAACAAGGCTAGAAGGAGGAAAAAATTCTCATGGTTCTGGAATAGAGGGGAATGATGTTGATGGGGAGGCAAAGATTCAAAAACGTAAGAGAAGAAAGAAGAAAATACAAAGGAATAACATGGATGTTGATGATGCTTCACGCCTGCGAAGGAGAACAAGGTACCTCTTCATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAGGGAGCTACTAAGAGCAGAGAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATATCATATGCCAGCTGGATTCTCTCAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGGTCTGTGTATCATGAACATATATTCTGTGCCAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACGTGCAATCGTGGTTTTCACCAGAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTAGAGGCAACAAATGCCCATCTTGGGACTCAATTCTCCCTGGACTGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGATATGCCTGATGGTGACATTGCATTACTTAATCCAGAGGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACAGCCACGGCATCGACACAGAAGGAGCTGATGAAAATGCATCCAATGATTCAACCAGTTCTTCCAGTCTGTGGTCTTTGAAAGGTGAATGTTCTCCAGTAGATGAAGGTGCCAGCCATGGACATTATTCTGTTAATAGCTGCATAGATTCTGATGAATCTGGGGAAATAGCATGTGGCCCTAGGCAGCGTAAAGCTGTTGACTACAAGAAACTCTATGATGAAATGTTTGGGAAGGATGCTCCAGCTTGTGAACAAGTGAGTGAAGATGAAGATTGGGGTCCTGTCAAAAGAAAGAGAAGAGAAAAGGAGTCTGATGCTGTCAATACTCTTATGACTCTGCATGAAAGTGACAATAAACATCCCAATAATGAGAAAAAGGAGAGAACAAGCCAGGGTTCTTCAGGCATACAAATAAGAAGATCCTGTTTCAGGATTCCGCTTTATGCAGTTGAGAAACTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCTGTGAGGGACAGTCTTTCGAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAGTGGTTCAAAAATGCACGTTACTTAGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACTTCTAAGATCATAAAGGATTCCATATCTCAAAACGTGGAGAAAGATGAGATTCTGAAATCAAAGGTCTCCAAAATTACTGTGATTCATTCCCAGAAGGATGGTGAAAACGACTCTAAGGAGGTCAGTGGTGATGTTAAGTTGAAGAAACTGTTGAAAAAAAGGAAAAGAGGGGTAAATTTTACATTTGAAGGAGCCTCTAAGGCAGCAGAGTTGGAATTTGAAAGACTCAGCAAAGTGAAGATTAAACTTGATAGCATGATGCAGAAATTAAATGAAGTTCAAAATTGCAGAGCAAAGGGTTCAAATAATAAACTCTATTCAAATGAACCCTCTATTATATATGTACCCACAGCCCAATTAAGGGAAAAGGTTGAATAA 2199 0.3988 IHTTTTTTKVEFNSEGKEKKQNKKHTVGDGGDASGTTTPGDTESINMRDVDNLNNKGSGKSSYSQEKTKSKLVSSKIKTSSTKRREKKHKVKSKSHKHTAGTNTSKKAISDSSINAPLEDSLNKKVISRKHRHKTDGKLSQMLSSTRLEGGKNSHGSGIEGNDVDGEAKIQKRKRRKKKIQRNNMDVDDASRLRRRTRYLFIKMKLEQNLIDAYSGEGWKGQSREKIRPERELLRAEKQILKCKLSIRDIICQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRGFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTQFSLDCTWQDVFKEEADMPDGDIALLNPEEEWPSDDPEDDDYNPERKEDSHGIDTEGADENASNDSTSSSSLWSLKGECSPVDEGASHGHYSVNSCIDSDESGEIACGPRQRKAVDYKKLYDEMFGKDAPACEQVSEDEDWGPVKRKRREKESDAVNTLMTLHESDNKHPNNEKKERTSQGSSGIQIRRSCFRIPLYAVEKLRQVFAENELPPKSVRDSLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGEQLQSFTSKIIKDSISQNVEKDEILKSKVSKITVIHSQKDGENDSKEVSGDVKLKKLLKKRKRGVNFTFEGASKAAELEFERLSKVKIKLDSMMQKLNEVQNCRAKGSNNKLYSNEPSIIYVPTAQLREKVE 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0861 732 MobiDBLite consensus disorder prediction 102 119 - -
Aed4g0861 732 SUPERFAMILY Homeodomain-like 529 592 IPR009057 -
Aed4g0861 732 ProSiteProfiles Zinc finger PHD-type profile. 278 335 IPR019787 -
Aed4g0861 732 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 329 IPR013083 -
Aed4g0861 732 MobiDBLite consensus disorder prediction 12 27 - -
Aed4g0861 732 MobiDBLite consensus disorder prediction 481 532 - -
Aed4g0861 732 MobiDBLite consensus disorder prediction 81 101 - -
Aed4g0861 732 SMART PHD_3 280 333 IPR001965 -
Aed4g0861 732 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 54 706 - -
Aed4g0861 732 CDD PHD_PRHA_like 280 332 IPR045876 -
Aed4g0861 732 ProSitePatterns Zinc finger PHD-type signature. 281 332 IPR019786 -
Aed4g0861 732 MobiDBLite consensus disorder prediction 407 423 - -
Aed4g0861 732 SMART HOX_1 535 597 IPR001356 GO:0003677
Aed4g0861 732 MobiDBLite consensus disorder prediction 392 406 - -
Aed4g0861 732 MobiDBLite consensus disorder prediction 372 423 - -
Aed4g0861 732 Pfam PHD-finger 280 335 IPR019787 -
Aed4g0861 732 ProSiteProfiles 'Homeobox' domain profile. 533 593 IPR001356 GO:0003677
Aed4g0861 732 MobiDBLite consensus disorder prediction 1 189 - -
Aed4g0861 732 Pfam Homeodomain 546 588 IPR001356 GO:0003677
Aed4g0861 732 MobiDBLite consensus disorder prediction 31 77 - -
Aed4g0861 732 MobiDBLite consensus disorder prediction 377 391 - -
Aed4g0861 732 MobiDBLite consensus disorder prediction 481 505 - -
Aed4g0861 732 Gene3D - 545 603 - -
Aed4g0861 732 SUPERFAMILY FYVE/PHD zinc finger 272 337 IPR011011 -
Aed4g0861 732 CDD homeodomain 541 588 IPR001356 GO:0003677
Aed4g0861 732 PANTHER POLYCOMB PROTEIN PCL 54 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0861 Aed-Chr4 7685119 7691659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0861 183 598 Homeobox Transcription Factor Family AT4G29940 59.198 1.95e-159 478
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Aed4g0861 Homeodomain 4.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0861 - - gmx:100787118 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed6g2054 6 23263109 23267651 Aed4g0861 4 7685119 7691659 PCT