Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0828 ATGATGAATGCTAACAAAACAAACTTTGGCAGTAGCAGGCTTGGAATGTTACCGTTGCCTCCGGGAATTGTACTTGATAGGCCTTTGTCTGCATCTATGGATGAATATGCAGTTGACAGTTCTGTTGAATGGCAACGAAAACGAAAGCAGTATTCCGGTGATGGTGGTAATCGATTTCCAGCTTCTATCACACACAGACACAGCCTTAGTCCGAGGGCTTTAATTAATGCATATGGCAGTGACAAAACATCATGGAAGAATACTGAAGAGGAGGAGTTTAATTGGGAAGATCTATGTCCAACCTTATTGCCTTCAACTGAAAGGCCTGTTGCTGTTGTTGTTGCAGCTAATGCAATTTTGTCAGAGCAAGATGCCAGGAACACGAAGGGATGCTGTGTTAGAGATCTTGGTCGTGCACCACTGGGTCAGGTACCTAAATTCCAAAACCAAACCAATCATGGTGCTTGGAAGATTTCTCATCATCCATCACAACATATATTTAGTAATAAGGGGCGAGCAAGGAGTTTTGCAATCCCTCCTATTGATAACATTCGCAATACAGATATAAATGTGACTCAACCTCCTACCTTGAATCCGATAACTCCATTGCGAAAACGTGTTAGGAGTCCTATTGTGAACAAGGATGCAAGTGTTTCAATGATACCTCAAGTGCAGTCCTCACAATTTAGCCATGCAAGTTCTTTGCAGCCACATGGTGCTTCTATAAGTACAGCCATGTCAAATCCGTTACCTGCTATGCAATTCCCTTTACCAGTTGGATATACTAACTTACTTAGTTCTCTGATGTCTCAAGGCGTGATCTCATTGTCTAATCAACTATCTGCACAGGATTCTGTTGGAACTGAGTTCAATCCAAATATGCTGAAGGTTCGTCACGAGTCTGTAGTGAAGGCCCTGTATAGTGATCTTCCTAGACAATGCAAAACTTGTGGACTCCGATTCAGATGCAAAGAGGAACACAGTAGTCACATGGATTGGCATGTGACTAAGAATCGGATGTCTAAGACTGAAAGCCGTAAGCAGAAGCCATCTCGCAAGTGGTTTGTGAGTGTGAAGCCGTGGCTTAGTGGTGCAGAGGCATTGGGAACAAAATCAGTTCCAGGTTTTTTGGCAACAGAAACCATAGATTATGAAGAAAAGAAAGATCATGAAGAGGTTGCAGTGCCAGCAGAAGAAAACCAGAATGCATGTGTATTGTGTGGAGAGGCTTTTGATGTGTTTTACAATGATGAAACGGAGGAGTGGATGTATAGAGGAGCTGCATACCTCAATGCACTCACACCCTCAGGAACAACATCAGGCATAGACAAAACACAGTTAGGCCCCATAATTCATGCTAAATGCGGATCAGACTCTAATATTCAAAAGTATATACCCAAAGGAATTGATGTGTAA 1416 0.4244 MMNANKTNFGSSRLGMLPLPPGIVLDRPLSASMDEYAVDSSVEWQRKRKQYSGDGGNRFPASITHRHSLSPRALINAYGSDKTSWKNTEEEEFNWEDLCPTLLPSTERPVAVVVAANAILSEQDARNTKGCCVRDLGRAPLGQVPKFQNQTNHGAWKISHHPSQHIFSNKGRARSFAIPPIDNIRNTDINVTQPPTLNPITPLRKRVRSPIVNKDASVSMIPQVQSSQFSHASSLQPHGASISTAMSNPLPAMQFPLPVGYTNLLSSLMSQGVISLSNQLSAQDSVGTEFNPNMLKVRHESVVKALYSDLPRQCKTCGLRFRCKEEHSSHMDWHVTKNRMSKTESRKQKPSRKWFVSVKPWLSGAEALGTKSVPGFLATETIDYEEKKDHEEVAVPAEENQNACVLCGEAFDVFYNDETEEWMYRGAAYLNALTPSGTTSGIDKTQLGPIIHAKCGSDSNIQKYIPKGIDV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0828 471 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 62 460 - -
Aed4g0828 471 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 62 460 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aed4g0828 471 ProSitePatterns Zinc finger C2H2 type domain signature. 314 334 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0828 Aed-Chr4 7168850 7170450 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0828 216 460 C2H2 Transcription Factor Family AT4G04885 54.023 1.13e-87 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0828 K14400 - gmx:100794796 517.694