Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0816 ATGGAGTGGGACAGCAACTCCGATCTCAGCGACGACGATGCTGCCGTTTCGTTTATTCTAAACGACGACGATGATGAAGTCGCCGGGCCCATCCCCTTCCCCGTCCTCCAAACGGCGCCGTGCGGCTTCGTCGTCACCGACGCGCTCGACCCCGACCACCCTATCATTTACGTCAACGCCGTCTTCGAGATGGTCACCGGCTACCGCGCCGAGGAAGTGCTTGGTCGCAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACTGTTGTTTCAGAGATTAGAAGATGTCTTGACGAAGGGGTTGAATTCCATGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCTCTTATGAACAGATTGCGGCTGACACCTATATATGGTGATGATGAGATAACTCATGTCATTGGAATTCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCCCTTCCCGGTTCTACAATTAAGCAATCTACTAAATCATCAGATCGGTTTCATTCGGTGCTTTCCTCATTGAATCCTCTTCCAGTAGGGGACCGTAATGTTACTCGTGGAGTTTGTGGGATATTGCAATTAAGTGATGAGGTATTGTCTCTCAAGATACTTGCTCTCTTAACTCCAAGAGATATTGCATCAGTTGGTTCTGTTTGTAGGCAATTGTATGAGCTAACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAACGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTTCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTGGCAAGAGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAGCTGACTGTTGGAGGTGCTGTTGAACCTTCACGCTGTAATTTTAGTGCTTGTGCAGTTGGTAATAGAGTTGTCCTATTTGGTGGTGAAGGGGTTAACATGCAACCTATGAATGATACCTTTGTATTGGACCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGCTCTCCTCCCCCTGGTCGGTGGGGCCACACACTTTCTTGTGTTAATGGTTCTCGGTTGGTTGTATTTGGAGGCTGTGGAACACAGGGCTTGCTCAATGATGTGTTTGTTCTGGACCTGGATGCAAAGCCTCCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCTAGATCTTGGCATAGCTCCTGTACTCTTGATGGTACTAAGCTGATAGTTTCTGGTGGCTGTGCTGATTCTGGGGTACTCTTGAGTGATACTTTCCTCCTTGATCTGTCGATGGAGAAACCTATCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCACGTCTTGGTCACACACTATCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGGCCCCTGCGTTTTCGCTCCAGTGATGTATTCACGATGGATTTAAGTGAGGAGGAGCCATGCTGGAGAAGTGTAACGGGGAGTGGAATGCCAGGTGCTGGAAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGCGGGAGAATTCTGATATTTGGTGGGTCTGTTGCGGGCCTTCATTCAGCCTCCCAGCTTTACATACTAGATCCAACTGATGAGAAGCCTACATGGAGAATCCTAAATGTACCAGGGTGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGAGGGACAAGAGCTATTGTATTGGGTGGTCAAACTGGGGAGGAATGGATGCTAAGTGAGCTTCATGAGCTGTCGTTGGCAAGTTCTGCCATCTAG 1839 0.4861 MEWDSNSDLSDDDAAVSFILNDDDDEVAGPIPFPVLQTAPCGFVVTDALDPDHPIIYVNAVFEMVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVVSEIRRCLDEGVEFHGELLNFRKDGSPLMNRLRLTPIYGDDEITHVIGIQFFTEANIDLGPLPGSTIKQSTKSSDRFHSVLSSLNPLPVGDRNVTRGVCGILQLSDEVLSLKILALLTPRDIASVGSVCRQLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRSVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGCPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSAI 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0816 612 PANTHER ADAGIO PROTEIN 1-LIKE 1 611 - -
Aed4g0816 612 CDD PAS 39 141 IPR000014 -
Aed4g0816 612 Gene3D - 274 476 IPR015915 GO:0005515
Aed4g0816 612 Pfam PAS domain 40 149 IPR000014 -
Aed4g0816 612 SUPERFAMILY F-box domain 192 261 IPR036047 GO:0005515
Aed4g0816 612 Pfam Galactose oxidase, central domain 296 346 - -
Aed4g0816 612 Gene3D - 196 244 - -
Aed4g0816 612 Pfam F-box-like 208 246 IPR001810 GO:0005515
Aed4g0816 612 Gene3D - 477 610 IPR015915 GO:0005515
Aed4g0816 612 Pfam Kelch motif 520 567 IPR011498 GO:0005515
Aed4g0816 612 Pfam Kelch motif 453 504 IPR011498 GO:0005515
Aed4g0816 612 SUPERFAMILY Kelch motif 283 501 IPR015915 GO:0005515
Aed4g0816 612 SUPERFAMILY Kelch motif 443 605 IPR015915 GO:0005515
Aed4g0816 612 ProSiteProfiles PAS repeat profile. 35 110 IPR000014 -
Aed4g0816 612 SUPERFAMILY PYP-like sensor domain (PAS domain) 39 149 IPR035965 -
Aed4g0816 612 TIGRFAM sensory_box: PAS domain S-box protein 50 148 IPR000014 -
Aed4g0816 612 Pfam Galactose oxidase, central domain 358 407 - -
Aed4g0816 612 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 611 - -
Aed4g0816 612 Gene3D PAS domain 33 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0816 Aed-Chr4 7026452 7032459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0816 35 243 AGC Kinase Gene Family AT5G58140 26.471 5.31e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0816 K12115 - gmx:100802828 1170.61