Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0806 ATGAAGTATATTAGGAGTAACAGCTTGAAGAGGCTCTTCTCGTTCGGGAGACGCGGGTTTGGAGAAGAAAGTGATGTTGGGTTGGTGGTTTCTCCTCGTGAAGAGCACCCTCCTAGACCCTCTTGGAAATGCTTCTCTTATGAAGAGTTGTTTGATGCCACCAATGGCTTCAGCTCAGAGAATGTCATTGGGAGAGGAGGGTATGCAGAGGTTTATAAGGGAACATTGAACGATGGTGAGGAAGTTGCAGTGAAGAGGCTCACTAGAACTTCAACAACGGATGAGAGGAAGGAGAAGGAATTTCTGATAGAGATTGGCACAATTGGTCACGTGCGCCATTCCAACGTGTTGCCTCTTCTGGGGTGTTGCATTGACAATGGACTTTACCTCGTTTTTGAGCTGTCCAACGTTGGTTGTGTTGCTTCTCTTATTCATGATGAGAACTTGCCTCCTTTGGATTGGGAAACAAGGTATAAGATAGCTCTTGGGACTGCACGTGGCCTTCACTACTTGCACAAAGGCTGCAAGAGGAGAATCATTCATAGGGATATCAAGTCCTCTAACATTTTGTTAACTGCAGATTTTGAACCCAAGATTTCTGATTTTGGATTAGCAAGGTGGCTTCCATCTCAGTGGACTCACCATTCAATAGCCCCAATAGAAGGGACATTTGGGCATTTGGCACCTGAGTACTACATGCATGGAGTTGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTGTTCTTGCTTGAAGTCATCTCTGGAAGAAAACCAGTGGATGGGTCTCACCAAAGCTTGCACAGCTGGGCTAAACCAATACTAAAGAAAGGGGAGATAGAAAAGGTGGTAGATCCAAGGCTTGGAGGGGCTTATGATGTGACACAGTTTAATAGAGTAGCCTATGCTGCCTCCTTGTGCATTCGGGCATCTTCAACTTGCAGACCTACCATGAGTGAGGTAGTGGAGGTAATGGAGGAGTGGGAGATGGATAAAGAGAAGTGGGAAATGGCAGAGGAAGAAGAGCAAGAGGAGGAGTTCTGGGGTTTTGAGGATCTGGAATATGAATATGACAGTTCCTTTTCAATAGTCCCTGTGTACTTAAGCTCACAGCTGGTGGAAGCTCATAAAAGGTTAGGTGGTAGTGTCAAGTGTGGCCAAATGGAACATGCATGTCATCCCAGTGAAAACCACAAAAGATAA 1203 0.4539 MKYIRSNSLKRLFSFGRRGFGEESDVGLVVSPREEHPPRPSWKCFSYEELFDATNGFSSENVIGRGGYAEVYKGTLNDGEEVAVKRLTRTSTTDERKEKEFLIEIGTIGHVRHSNVLPLLGCCIDNGLYLVFELSNVGCVASLIHDENLPPLDWETRYKIALGTARGLHYLHKGCKRRIIHRDIKSSNILLTADFEPKISDFGLARWLPSQWTHHSIAPIEGTFGHLAPEYYMHGVVDEKTDVFAFGVFLLEVISGRKPVDGSHQSLHSWAKPILKKGEIEKVVDPRLGGAYDVTQFNRVAYAASLCIRASSTCRPTMSEVVEVMEEWEMDKEKWEMAEEEEQEEEFWGFEDLEYEYDSSFSIVPVYLSSQLVEAHKRLGGSVKCGQMEHACHPSENHKR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0806 400 SMART serkin_6 57 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0806 400 PANTHER OS04G0654600 PROTEIN 29 353 - -
Aed4g0806 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Aed4g0806 400 ProSitePatterns Protein kinases ATP-binding region signature. 63 85 IPR017441 GO:0005524
Aed4g0806 400 ProSiteProfiles Protein kinase domain profile. 57 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed4g0806 400 Pfam Protein tyrosine and serine/threonine kinase 60 323 IPR001245 GO:0004672|GO:0006468
Aed4g0806 400 Gene3D Transferase(Phosphotransferase) domain 1 137 353 - -
Aed4g0806 400 PANTHER OS08G0249100 PROTEIN 29 353 - -
Aed4g0806 400 SUPERFAMILY Protein kinase-like (PK-like) 34 328 IPR011009 -
Aed4g0806 400 Gene3D Phosphorylase Kinase; domain 1 31 134 - -
Aed4g0806 400 Coils Coil 325 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0806 Aed-Chr4 6959776 6964018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0806 24 361 Trihelix Transcription Factor Family AT5G38560 39.554 6.87e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Aed4g0806 PK_Tyr_Ser-Thr 3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0806 - - gmx:100804983 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0806 4 6959776 6964018 Aed4g0806 4 6959776 6964018 ECH
Aed6g2027 6 23060793 23065584 Aed4g0806 4 6959776 6964018 PCT