Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0793 ATGGAGATAGAGAGAGAAGAGAAAGAAGTGATAAAGTACCGTGGCGTGAGAAGAAGGCCATGGGGTAAGTTTGGAGCAGAGATCAGAGATCCAACCAAACCTACTGGAAGACAATGGTTAGGAACATTTGACACTGCTGAAGAAGCTGCTAGAGCTTATGATCGTGCTGCCATTGGTTTGAGGGGTGCTCTTGCAATTCTTAATTTCCCTGATGAGTACTATTCTCATCTCCCTTTTGTGGCATCATCAAATTCTTCTTCTAAGGAGGTTTTTGAGTTTGAGTATTTGGATGACAAGGTGTTGGAAGAGCTTCTTGGGGTAGAAGAGAAGAGAAGAAATGATGATCAAGACTAA 354 0.4237 MEIEREEKEVIKYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEAARAYDRAAIGLRGALAILNFPDEYYSHLPFVASSNSSSKEVFEFEYLDDKVLEELLGVEEKRRNDDQD 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0793 117 PRINTS Ethylene responsive element binding protein signature 13 24 IPR001471 GO:0003700|GO:0006355
Aed4g0793 117 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Aed4g0793 117 Pfam AP2 domain 12 62 IPR001471 GO:0003700|GO:0006355
Aed4g0793 117 SMART rav1_2 12 76 IPR001471 GO:0003700|GO:0006355
Aed4g0793 117 PANTHER DNA-BINDING DOMAIN 8 109 IPR044808 GO:0003700|GO:0009873
Aed4g0793 117 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Aed4g0793 117 Gene3D AP2/ERF domain 11 71 IPR036955 GO:0003700|GO:0006355
Aed4g0793 117 PANTHER ETHYLENE RESPONSE FACTOR 8 109 - -
Aed4g0793 117 SUPERFAMILY DNA-binding domain 12 72 IPR016177 GO:0003677
Aed4g0793 117 ProSiteProfiles AP2/ERF domain profile. 12 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0793 Aed-Chr4 6645863 6646216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0793 12 112 AP2-EREBP Transcription Factor Family AT3G23230 59.504 5.42e-43 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed4g0793 AP2 1.6e-12 CL0081