Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0789 ATGGCTACAACGTCGGTGGTGCCGGCGAACAGGAGACGTGCGGCAAACGCCGCGGAGGATATGGACTTCGAGACGACGGAGGGCGTGAAGGCGATCGCGAGCTTCGAGGAGATGGGGATTAAGGACGATCTGCTCCGCGGAATCTACCAGTACGGCTTCGAGAAGCCCTCCGCGATTCAGCAGCGAGCCGTCACTCCCATCATCCAGGGCCGTGACGTCATCGCCCAGGCCCAATCCGGAACTGGCAAGACCTCCATGATTGCTCTCACTGTTTGCCAGGTCGTCGATACCTCCGTCAGAGAGGTTCAGGCTTTAATATTGTCACCAACGAGGGAACTGGCCTCGCAGACTGAGAAGGTTATATTGGCTATTGGGGATTTCATTAATATACAAGCTCATGCATGCGTTGGAGGCAAAAGTGTTGGAGAAGATATAAGGAAACTTGAGTATGGAGTTCATGTGGTATCTGGAACTCCTGGCCGAGTTTGTGACATGATCAAAAGGAGAACATTGCGCACAAGAGCTATAAAGATGCTAGTTCTTGACGAATCTGATGAAATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTCCCACCTGACCTTCAGGTTTGCTTGATTTCTGCTACCCTTCCTCATGAAATACTGGAGATGACAAACAAGTTCATGACTGATCCTGTAAGGATCCTTGTTAAACGTGATGAATTGACATTGGAGGTGGACTGGTTAACTGAAAAAATGCGTAACAATAATTTCACTGTCTCATCAATGCACGGTGACATGCCTCAGAAAGAAAGAGATGCTATAATGGGAGAATTTCGTGCTGGAACAACACGTGTACTAATAACAACTGATGTTTGGGCCCGTGGTCTTGATGTTTCTCTAGTTATCAATTATGACCTTCCAAATAATCGTGAGCTTTACATTCATCGAATTGGCCGCTCTGGACGTTTTGGACGAAAGGGTGTTGCGATAAATTTTGTGAAGAGTGATGACATCAAGATCTTGAGAGACATTGAACAATACTACAGTACTCAGATTGATGAAATGCCAATGAATGTTGCTGATCTTATATAA 1092 0.4579 MATTSVVPANRRRAANAAEDMDFETTEGVKAIASFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALILSPTRELASQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEMTNKFMTDPVRILVKRDELTLEVDWLTEKMRNNNFTVSSMHGDMPQKERDAIMGEFRAGTTRVLITTDVWARGLDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0789 363 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 244 356 - -
Aed4g0789 363 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 20 244 - -
Aed4g0789 363 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
Aed4g0789 363 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 219 363 IPR001650 -
Aed4g0789 363 CDD SF2_C_DEAD 244 333 - -
Aed4g0789 363 CDD DEADc_EIF4AIII_DDX48 35 235 - -
Aed4g0789 363 Gene3D - 17 237 IPR027417 -
Aed4g0789 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 237 IPR027417 -
Aed4g0789 363 SMART ultradead3 52 251 IPR014001 -
Aed4g0789 363 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 234 IPR014001 -
Aed4g0789 363 Pfam DEAD/DEAH box helicase 58 220 IPR011545 GO:0003676|GO:0005524
Aed4g0789 363 SMART helicmild6 246 324 IPR001650 -
Aed4g0789 363 Pfam Helicase conserved C-terminal domain 239 324 IPR001650 -
Aed4g0789 363 PANTHER BNAC03G41130D PROTEIN 244 356 - -
Aed4g0789 363 PANTHER BNAC03G41130D PROTEIN 20 244 - -
Aed4g0789 363 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 358 IPR027417 -
Aed4g0789 363 Gene3D - 240 362 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0789 Aed-Chr4 6607785 6611519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0789 23 363 Eukaryotic Initiation Factors Gene Family AT3G19760 78.385 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0789 K13025 - gmx:100795032 671.003