Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0786 ATGGTCTTCTCAACTGTCTTTCTCCATGAAGATGGCCCCTTTTTTTCAAGAAAAAGGCCAAGAGTGTCAGATCTTGGACATCAAGATATAGATTTACATGCAGATGCAGGAATTTCCAGTGATATTTCCTTGTTCTCACATCAAGATATAGAAAGGCGCAGGAGTACTGGTGATGTTCCCTCTTCCAGCAATACTGACGATAAAGTTGATCCAGATTCTGGAATGGAGATGAGCTGCCCATCAAATGTTAATAGTGACTATGTTCCTGTGTGTTCTACCACAGGGCATATTTCACACATGGACCAGAGTTTCTGTGACTATGTGCAACAGCCTGCTTTTGTGAGTGGATGGATGTATGTGAATGAAAATGGGCAAATGTGTGGTCCCTATATTAAGGAGCAGTTATATGAGGGCCTTACTACTGGTTTCTTGCCATCTGAGCTTCCTGTGTATCCAGTGATTAATGGCACAATAATGAACCCTGTACCACTGAATTACTTCAAACAGTTCCCAGATCATGTTTCCACTGGGTTTGCATATCTGAGTATGGGTATCTCAGGCACAAGGGTGCCTACAATGGCAGTATATGAGCAAGATAGGTCTTTTGAGCATCCTGCTACTCTGTCTGTTAATCCTGATTCACAGTCAGTTTCACAGTCGCTTGTCAATTACTGTGTTAAGGAATCCAATCACTTAAATTCAAACTCAGAGGCATTCAAAAGTTTAATATCTTGTCAGATGTTAGGTGTAGAATGCTGTTGGCTTTATGAGGATGAGAAGGGTATGAAACATGGGCCACATTCTATTAACGAATTGATTTCCTGGCACCGTCATGGATATCTTAAAGATTCAGTGGTGATCTCTCATTCTGACAATAAGTATGACACCTTTGTGCTATTGTCTGCTGTAAATGCATTAAAAGGAGATATCTCTGGAACCATTTGTAGATCAGGTTCCACAAATAATGAGGTTGGTGATATGGTAAACTTAGTTGGTGAAATATCTGAGAACATTTCTTCCCAATTGCACATGGGTATCATGAAAGCTGCTCGCAGAGTTATGCTAGATGGAATTATTGGTGATATCATCGCAGAATTTGTTACGGAAAAGAAACATAAGAGGCATAAGCTTGAATCAGCTGACTGTACTCTGGAAAACAATATGTCTAAGTTTTCTGCGGAGATCAGTAAAGGTTCTGCTATTCCCAGTGACCGTGCATCTTCCCACACTTTGGACCATCAAATATGTCATGAAAGTTCCAGACTGTCCTCTGCCATTATTAAATCAGTTGGAAGTATTGAAAATTTTTGGTGGTCATATGCTGTTGTTCGCAAGGTAGTTCTTGATTATTCCATGCAAGTCATGTGGAATGCAGTGTTTTTTGACACAATAGCAGAATACTTATCTTCCTGGAGGAAAAAGAAGCTCTGGTCTCATCCAAACCCTCAACCATCTGCTAATGGATGTAAAGATCATACTGAAAAGATTGAATCAGAAGCTTTGATTCTCAATCCAGATTCTTCTGAAAGCAATGTTGATGGCTATAATCAGTTTGGAGTACTGGCAACAGAAATAAATTGTGCCCGGTTATTTTCATCCCCTAGTAGCCTCAAAGGTGGAAACTTGCTAGAAGGTCAAAAAGTTTCATGCCCTTATGATTACTCTAAACATTTGACATTCATTCTTGAAAGTGTGGAGAATGAGCTTCACTTCTCTTCAAAGGTGTCTTTAGCTGATTACATTCAAAGTTTTATTGAAAAGGAAGTGAACAAATTAATTCCTTTCCAGGAAGAAAACAAATTGAAGGAGGTTGCTGTTGATGACTCTCATTTTTCAGAGATACTTGCTGATAAAACACATGTGAAGGAAATTCTAAATGACAAGTCTGTGGATCCTGTGAAAGCTGGATATTCATCTGGCAAGCCTGCATCTGGAAACCATATGTCTGATATATTTTCGAAAGCATTTAAGGAGTTGTGTGGATATGCAGATGATGTGGTTGAAGAGGAGATTGATGACCTACCACCTGGACTTGAGAAATCTCAAACAGTTGTCCTGAACTACAATTCAAAATTTCGACCTTCAAGGTCGGTTGAAGGTAGTCCTAAGATTACTGAATATGTTGCTACTGCACTGTGCCGACAGAAACTGCATGATGAAGTTCTGGAAGAGTGGAAGTTGTTCTTCCTTGATTCTGTGCTCAAGCAAGCTTTTATATCATCAAGTACCAAAAAGAAACATTTGAAGTCTGATGGTCAGAAGAAAAGAAAAATGGTCAATGGAAGCAAGGAACATTTGAAGGGTGCGACTTCTGGACTGGGAAGAGTGAAGGAAGGAGCAAAGAGTTCTTCTGAAGTTCCTCGAGTGATTGGAAAGAATACCTATTGCCGCAAGAAGCTGTCACAGAAGGAGTTATTTTCCTCACAATCTGTAGCAGAAAATGATTCTAGGCCAGAGAAGCAGCCTGTGGCCAAGTTAAGGAAACATGTGTCTGGAGATGTTAATGAGGCTGCAGAGGTTAAAATAGCTTCTGTTAAACCTGGAAAGACAAAGATGATTAAAGGGAAGAAGGATACATCTTCTAAGGGCAAATCTTCTGTCAGTGTCAATAGTAGCTCACACAATGATCAGTTATCTATAAAGAATAAAGCTGGTCAAAAAGTGTTGAAGTTTTCAGGTGAACTTCAAAATAATGTTAAGGATGTTGTAAAATCCAATGTTAAGAAGCTTTCAGTGTCTACTGCTAATAGTGTTGGCATGAAGAAGGTTGTCAAAAGTGATGGCTGTGATGGCACTGTTAAAGAAAAGACCACAGGTCATTGCTCGAGAGAGATACAAAATGAGGGTGCAGATCTTCTGAAAGTGCCTCAACTGAAGGCACGGAACAAGCGTTTGTGTTTTCAAAGAAGCAAGATCCATGACTGGGGTCTTGTTGCCATGGAGCCAATTGAGGCAGAGGACTTTGTGATTGAATATATTGGAGAACTAATTCGTCCTCAGATATCTGATATACGTGAACGTCGGTACGAGAAGATGGGAATTGGAAGCAGTTATCTTTTTAGACTTGATGATGGTTATGTGGTTGATGCTACCAAGAGAGGTGGGATTGCAAGATTTATTAACCACTCTTGTGAGCCCAACTGCTATACAAAGGTTATATCTGTTGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGGCATATAGCTGCTGGTGAAGAAATTTCATACAATTATAAGTTCCCATTGGAAGAGAAAAAGATTCCCTGTAACTGTGGTTCTAGAAATACAAAAATGAAGGTGGAAAGTTGCGTATTGGTCCTCCTTGCTAATGGTTGTTCTTTTCGAAGTCCACTTGTTAACTTGTTGAGTGGACAGAATTTTTGCCGTAGGTTATGGATCAGCATTCTTGATGATATAGGCTGA 3426 0.3964 MVFSTVFLHEDGPFFSRKRPRVSDLGHQDIDLHADAGISSDISLFSHQDIERRRSTGDVPSSSNTDDKVDPDSGMEMSCPSNVNSDYVPVCSTTGHISHMDQSFCDYVQQPAFVSGWMYVNENGQMCGPYIKEQLYEGLTTGFLPSELPVYPVINGTIMNPVPLNYFKQFPDHVSTGFAYLSMGISGTRVPTMAVYEQDRSFEHPATLSVNPDSQSVSQSLVNYCVKESNHLNSNSEAFKSLISCQMLGVECCWLYEDEKGMKHGPHSINELISWHRHGYLKDSVVISHSDNKYDTFVLLSAVNALKGDISGTICRSGSTNNEVGDMVNLVGEISENISSQLHMGIMKAARRVMLDGIIGDIIAEFVTEKKHKRHKLESADCTLENNMSKFSAEISKGSAIPSDRASSHTLDHQICHESSRLSSAIIKSVGSIENFWWSYAVVRKVVLDYSMQVMWNAVFFDTIAEYLSSWRKKKLWSHPNPQPSANGCKDHTEKIESEALILNPDSSESNVDGYNQFGVLATEINCARLFSSPSSLKGGNLLEGQKVSCPYDYSKHLTFILESVENELHFSSKVSLADYIQSFIEKEVNKLIPFQEENKLKEVAVDDSHFSEILADKTHVKEILNDKSVDPVKAGYSSGKPASGNHMSDIFSKAFKELCGYADDVVEEEIDDLPPGLEKSQTVVLNYNSKFRPSRSVEGSPKITEYVATALCRQKLHDEVLEEWKLFFLDSVLKQAFISSSTKKKHLKSDGQKKRKMVNGSKEHLKGATSGLGRVKEGAKSSSEVPRVIGKNTYCRKKLSQKELFSSQSVAENDSRPEKQPVAKLRKHVSGDVNEAAEVKIASVKPGKTKMIKGKKDTSSKGKSSVSVNSSSHNDQLSIKNKAGQKVLKFSGELQNNVKDVVKSNVKKLSVSTANSVGMKKVVKSDGCDGTVKEKTTGHCSREIQNEGADLLKVPQLKARNKRLCFQRSKIHDWGLVAMEPIEAEDFVIEYIGELIRPQISDIRERRYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEISYNYKFPLEEKKIPCNCGSRNTKMKVESCVLVLLANGCSFRSPLVNLLSGQNFCRRLWISILDDIG 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0786 1141 SMART gyf_5 252 306 IPR003169 GO:0005515
Aed4g0786 1141 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 948 1096 - -
Aed4g0786 1141 Gene3D SET domain 837 1103 IPR046341 -
Aed4g0786 1141 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 14 928 IPR044570 GO:0042800|GO:0051568
Aed4g0786 1141 Pfam GYF domain 254 296 IPR003169 GO:0005515
Aed4g0786 1141 SMART set_7 963 1086 IPR001214 GO:0005515
Aed4g0786 1141 SUPERFAMILY SET domain 959 1096 IPR046341 -
Aed4g0786 1141 CDD SET_SETD1 951 1096 - -
Aed4g0786 1141 MobiDBLite consensus disorder prediction 807 831 - -
Aed4g0786 1141 Pfam SET domain 975 1079 IPR001214 GO:0005515
Aed4g0786 1141 SUPERFAMILY GYF domain 249 305 IPR035445 -
Aed4g0786 1141 MobiDBLite consensus disorder prediction 745 785 - -
Aed4g0786 1141 MobiDBLite consensus disorder prediction 847 881 - -
Aed4g0786 1141 ProSiteProfiles SET domain profile. 963 1080 IPR001214 GO:0005515
Aed4g0786 1141 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 14 928 - -
Aed4g0786 1141 MobiDBLite consensus disorder prediction 862 881 - -
Aed4g0786 1141 Gene3D - 244 329 IPR035445 -
Aed4g0786 1141 Gene3D - 106 178 IPR035445 -
Aed4g0786 1141 ProSiteProfiles GYF domain profile. 251 301 IPR003169 GO:0005515
Aed4g0786 1141 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 948 1096 IPR044570 GO:0042800|GO:0051568
Aed4g0786 1141 MobiDBLite consensus disorder prediction 51 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0786 Aed-Chr4 6560446 6572993 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0786 941 1098 C2H2 Transcription Factor Family AT2G23740 36.667 1.29e-17 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aed4g0786 SET 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0786 - - gmx:100805708 1610.89