Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0784 ATGGCGCCGGCGGCAATCGGAGGCCTGCAGCTGACTTCGCTCGCCGGCGACTCCGATGAGCTCGAGGACATGCGGCTGTTGGACTCCTACGACGAAATCGACGGCGGAGCGAGGCGGATTCAGGTGACTGTCAACGGAATGACCTGCGCCGCTTGCTCCAATTCCGTCGAATCAGCTCTCAAATCACTCGACGGCGTTATCAGCGCCTCCGTCGCACTGCTTCAGAACAAAGCCGACGTCGTTTTCAACTCGGCTCTGCTCAAGGATGAAGACATAAAAAATGCAATTGAAGATGCTGGGTTTGAAGCAGACATATTACCTGAATCCAGTACAGTTGGGAAGGTGCCACATGGAACCCTGGTGGGACAGTTCACAATTGGAGGTATGACATGTGCAGCATGTGTAAATTCTGTTGAAGGTATTTTAGGAAATCTTCCAGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCATCAGGTGAAGTTGAATATGATCCCAGTGTAATTAGTAAAGATGATATAGTCAATGCGATTGAAGATTCAGGTTTTGATGGTTCATTTATACAAAGCAATGAGCAGGATAAAATAATTTTAGGGGTGGTTGGTGTGTACAGTCTGATTGATGCACAAATTTTAAAAGGCATTCTAAGCAGCACAAATGGAGTAAGGGAGTTTCATTTTGATCAGATTTCAGGTGAATTGGATGTTCTGTTTGATCCTGAAGTTCTGAGTTCTAGATCCGTAGTTGATGCAATCCAGGAGGGAAGCAATGGAAAGTTTAAATTACAAGTTAGAAGCCCTTATACAAGAATGGCTTCTAAAGACGTTGAAGAAATCTCAACTATATTTCGGCTCTTTATCTCCAGTCTGCTTCTTAGTATTCCTCTCTTCTTCATGAGGGTAGTTTGTCCTCATATACCACTATTCTATTCCTTGTTACTTCGGCGATGTGGGCCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTAGTGAGTGTCATCCAGTTTGTGATTGGTAAGCGCTTCTACATTGCAGCTGGCCGAGCTCTTAGAAATGGTTCTACAAACATGGATGTCCTTGTTGCTGTGGGAACTACTGCTTCTTATGTTTATTCTGTTTGTGCTCTTCTATATGGTGCTCTTACTGGGTTTTGGTCTCCAACATACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCCAAGGGAAAGACATCTGATGCTATCAAGAAATTAGTAGAACTTGCTCCTGCAACAGCTTTACTAGTTATCAAAGATAAAGGTGGTAAATCTATTGAAGAAAGGGAAATTGATTCCTTGCTTGTTCAACCTGGTGACACATTGAAAGTTTTTCCTGGTGCGAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACTGGTGAATCTGTACCTATTTTGAAGGAGGAGAATACTTCCGTTATTGGAGGCACAATAAATTTGCATGGCGTCCTTCATGTTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATTATTAGTTTGGTTGAGACAGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTACGTAGCAAGCATATTTGTTCCTTCGGTTGTTTCTTTGGCATTATTAACATTATTGGGCTGGTATATTGCTGGGTCTATTGGAGCTTATCCAGAAGAATGGCTGCCAGAAAATGGAAATCACTTTGTTTTTGCCCTAATGTTCTCAATATCTGTAGTAGTGATTGCATGTCCCTGTGCACTTGGCTTGGCTACACCAACGGCTGTCATGGTGGCAACAGGGGTTGGGGCAAACAATGGAGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGAAGGTGAAGTATGTGATATTTGATAAAACAGGCACTCTAACTCAGGGAAAAGCCACTGTTACTACTGCCAAGACATTTACAGGAATGGAACGTGGAGAATTTCTTAAATTGGTGGCTTCTGCGGAGGCTAGCAGTGAACACCCTCTAGCAAAAGCAATTTTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCTGCTACTACTGGTACTGAGAATGATGCAAAATCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTGCTCTTCCTGGAAAAGGTGTTCAATGTTTTATAGATGGGAAGCGTATTTTGGTTGGTAACAGGAAGTTGATGGAGGAAAATGGCATAGATATTTCAACAGAAGTGGAAAATTTTGTGGTAGAGCTGGAAGAAAGTGCAAAGACAGGGACACTAGTAGCATATAATGATATATTAACTGGAGTCTTGGGGATTGCAGATCCACTAAAGAGAGAGGCTTCTGTAGTCATAGAGGGCCTCCAGAAAATGGGTGTCACACCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGTGCTGTTGCCAAGGAGGTTGGCATCCAAGATGTTAGAGCAGAGGTCATGCCAGCGGGAAAAGCTGATGCTGTTCGTTCATTCCAAAAAGATGGGAGCATAGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTGGCTGCTGCTGATGTTGGTATGGCGATTGGGGCTGGAACTGATATTGCAATAGAAGCTGCTGATTATGTGCTCATGAGAAATAACTTGGAAGATGTCATCACAGCCATTGATCTTTCCAGGAAAACCTTTTCTCGTATTCAATTAAATTACGTGTTTGCCATGGCTTACAATGTTGTGTCTATACCAGTTGCTGCTGGTGTGCTTTATCCTTCACTGGGGATCAAGCTGCCACCATGGGTTGCTGGTGCATGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAAAAGATATAGAAGACCCAGACTTACTACAATACTTGAAATAATTGTAGAATAA 2961 0.4303 MAPAAIGGLQLTSLAGDSDELEDMRLLDSYDEIDGGARRIQVTVNGMTCAACSNSVESALKSLDGVISASVALLQNKADVVFNSALLKDEDIKNAIEDAGFEADILPESSTVGKVPHGTLVGQFTIGGMTCAACVNSVEGILGNLPGVKRAVVALATSSGEVEYDPSVISKDDIVNAIEDSGFDGSFIQSNEQDKIILGVVGVYSLIDAQILKGILSSTNGVREFHFDQISGELDVLFDPEVLSSRSVVDAIQEGSNGKFKLQVRSPYTRMASKDVEEISTIFRLFISSLLLSIPLFFMRVVCPHIPLFYSLLLRRCGPFLMGDWLKWALVSVIQFVIGKRFYIAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATALLVIKDKGGKSIEEREIDSLLVQPGDTLKVFPGAKIPADGIVTWGSSYVNESMVTGESVPILKEENTSVIGGTINLHGVLHVQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPSVVSLALLTLLGWYIAGSIGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQKVKYVIFDKTGTLTQGKATVTTAKTFTGMERGEFLKLVASAEASSEHPLAKAILAYARHFHFFDDSSATTGTENDAKSGWLFDVSDFSALPGKGVQCFIDGKRILVGNRKLMEENGIDISTEVENFVVELEESAKTGTLVAYNDILTGVLGIADPLKREASVVIEGLQKMGVTPVMVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADAVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIQLNYVFAMAYNVVSIPVAAGVLYPSLGIKLPPWVAGACMALSSVSVVCSSLLLKRYRRPRLTTILEIIVE 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0784 986 SUPERFAMILY HMA, heavy metal-associated domain 119 192 IPR036163 GO:0046872
Aed4g0784 986 CDD HMA 41 103 IPR006121 GO:0046872
Aed4g0784 986 TIGRFAM TIGR00003: copper ion binding protein 40 103 IPR006122 GO:0005507
Aed4g0784 986 TIGRFAM TIGR00003: copper ion binding protein 123 184 IPR006122 GO:0005507
Aed4g0784 986 PANTHER ATP7, ISOFORM B 12 979 - -
Aed4g0784 986 ProSitePatterns Heavy-metal-associated domain. 126 155 IPR017969 GO:0046872
Aed4g0784 986 Gene3D - 654 793 IPR023299 GO:0000166
Aed4g0784 986 ProSitePatterns Heavy-metal-associated domain. 44 74 IPR017969 GO:0046872
Aed4g0784 986 ProSiteProfiles Heavy-metal-associated domain profile. 39 105 IPR006121 GO:0046872
Aed4g0784 986 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 396 664 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0784 986 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 728 941 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0784 986 Gene3D - 122 187 - -
Aed4g0784 986 SFLD C1.7: P-type atpase like 625 912 - -
Aed4g0784 986 PRINTS P-type cation-transporting ATPase superfamily signature 479 493 - -
Aed4g0784 986 PRINTS P-type cation-transporting ATPase superfamily signature 883 895 - -
Aed4g0784 986 PRINTS P-type cation-transporting ATPase superfamily signature 643 657 - -
Aed4g0784 986 PRINTS P-type cation-transporting ATPase superfamily signature 785 796 - -
Aed4g0784 986 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Aed4g0784 986 PRINTS P-type cation-transporting ATPase superfamily signature 807 817 - -
Aed4g0784 986 SUPERFAMILY Calcium ATPase, transduction domain A 443 529 IPR008250 -
Aed4g0784 986 CDD HMA 123 184 IPR006121 GO:0046872
Aed4g0784 986 Gene3D - 634 910 IPR023214 -
Aed4g0784 986 SFLD p-type atpase 625 912 IPR044492 -
Aed4g0784 986 ProSitePatterns E1-E2 ATPases phosphorylation site. 645 651 IPR018303 -
Aed4g0784 986 CDD P-type_ATPase_Cu-like 284 956 - -
Aed4g0784 986 Pfam E1-E2 ATPase 426 622 - -
Aed4g0784 986 SUPERFAMILY HAD-like 642 966 IPR036412 -
Aed4g0784 986 SUPERFAMILY HMA, heavy metal-associated domain 36 107 IPR036163 GO:0046872
Aed4g0784 986 PANTHER HEAVY METAL P-TYPE ATPASE 12 979 - -
Aed4g0784 986 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872
Aed4g0784 986 Pfam Heavy-metal-associated domain 42 102 IPR006121 GO:0046872
Aed4g0784 986 Pfam Heavy-metal-associated domain 124 184 IPR006121 GO:0046872
Aed4g0784 986 PRINTS H+-transporting ATPase (proton pump) signature 860 876 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0784 986 PRINTS H+-transporting ATPase (proton pump) signature 891 916 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Aed4g0784 986 Pfam haloacid dehalogenase-like hydrolase 639 874 - -
Aed4g0784 986 Gene3D - 411 533 - -
Aed4g0784 986 Gene3D - 37 108 - -
Aed4g0784 986 SUPERFAMILY Calcium ATPase, transmembrane domain M 377 934 IPR023298 -
Aed4g0784 986 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 357 969 IPR027256 GO:0006812|GO:0016021|GO:0019829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0784 Aed-Chr4 6544857 6551904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0784 1 986 Primary Pumps ATPases AT5G44790 75.174 0.0 1508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0784 K17686 - gmx:100804960 1791.93