Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aed4g0740 | ATGGAAGCTTTCGGCGGGTTGATGGTCGATGAGAAAGCCGTTAGGGTTGAGAACGCATTCCTTGATTTTCTCAAAAGCTTCAAATCTGGCCAGCGGAACGAACTCAATTACGAGGCGGAGATCGACCTGATGAAATACTACGATTCCAACACCATGTTCGTCGATTTTGAGCATGTCATCAGATTCAGCGATCTTCTCCAGCAAACCATTTCCGATGAATACTTGAGATTTGAACCTTATTTGAAAAACGCTTGCAAGAGATTTGCTATGGAACTGAAGCCATCGGTTGTATCTGACGATAGCCCTGACAAGGACATCAACATTGCCTTCTATAACATTCCCATCATTAAAAGGTTAAGGGAATTGGGTACAGGGGAGATTGGAAGGCTTGTGTCTGTGACAGGAGTGGTGACGAGGACCAGTGAGGTTCGACCTGAACTTGTTCATGGGACTTTCAATTGCCTGGATTGCGGTGGTGTTGTAAAGAGTGTCGAACAGCAATTCAAGTATACTGAGGTGCCAACAATCTGCACAAATGCTACCTGTAACAATCGAACAAGGTGGGTGCTGCTGCGTCAAGAGAGCAAATTTGCTGACTGGCAGAGGGTCAGAATGCAGGAGACGTCTAAAGAAATACCTGCAGGGTCTCTTCCTAGGTCCTTGGATGTTATTCTTCGTCATGAGATCGTGGAGCAGGCCAGGGCTGGTGACACGGTGATTTTCACAGGTACTGTGGTTGCTATACCTGACATAATGGCATTGGCATCTCCGGGAGAGAGATCAGAGTGTCGTCGTGACCCTTCTCAACGCAAGGGTTCTACAGCTGGAAATGAAGGCCTTAGTGGTCTCAAGGCTTTGGGAGTCAGAGACCTCAACTATCGTCTTGCTTTTATTGCCAACTCTGTTCAGATTTGTGATGGTAGAAAAGAAATAGACATCAGAAATAGAAGGAAGGGTGCCGATGAAGACAATCAACAGTTTACTGATCAGGATCTGGAAGAAATTAAACGAATGAGGAACACTCCAGATTTTTTCACCAAACTAGTTGAAAGCATTGCTCCAACTGTTTTTGGCCATGCAGATATAAAGAGAGCTATCCTTCTTATGCTATTGGGTGGTGTCCACAAATTTACTCATGAAGGCATCAACCTCAGAGGAGACATAAACGTTTGTGTTGTTGGAGATCCCAGCTGTGCAAAATCTCAGTTTCTCAAGTATACTGCAGGCATAGTTCCAAGATCTGTGTATACATCTGGGAAATCATCATCTGCCGCTGGTTTGACTGCAACTGTTGCTAAGGAACCAGAAACTGGGGAGTTTTGTATTGAGGCTGGTGCTTTGATGCTTGCGGACAATGGCATTTGTTGCATTGATGAATTTGACAAGATGGACATCAGAGATCAGGTTGCAATTCATGAGGCCATGGAACAGCAGACTATTAGTATCACAAAAGCAGGTATACAAGCAACACTTAATGCTCGGACTTCCATTCTTGCTGCTGCCAATCCTGCTGGGGGACGCTATGATAAATCTAAACCACTTAAGTACAATGTGGCTCTTCCACCAGCTATACTTTCAAGGTTTGATCTCGTATATGTTATGATTGATGACCCAGACGAAAATACAGACTACCACATAGCTCACCATATTGTGAGAGTTCATCAAAAGCATGAAGCTGCTCTTGCTCCAGCATTCACTACAGCAGAACTGAAGCGTTACATAGCTTATGCAAAAACTCTTAAACCAAAGCTCGCACCAGATGCCAGAAGACTACTGGTAGACTCTTACGTTGCTCTCCGTAGAGGTGATACAAATCCTGGAAGTAGGACTGCATATCGAATGACAGTTAGGCAGTTGGAGGCATTAATCAGGCTGTCGGAGGCCATTGCACGGTGTCATTTGGACAATGAGGTACAACCTCGCCATGTTCGTCTAGCAGTAAAACTGCTGAAAACTTCCATAATAAGTGTGGAGTCCAATGAAATTGATCTGTCTGAGTTTCAAGAAGAAAACCAAGATGAAGGTACAGGTGGTGGCGATGGCAATGATAATAATAGAGATGCTGATGATCAAGTGAGAAACAATGCAGCTCAGCAAGCTGCTGAAAATGCTAATGATCAAGTGGGAAACGATGCAGCTCAGCAAGCTGCTGGAAATGCTAATGATCCCATGGGAAATGAAGCTCAGCAAGCTGCTGGAAATGCAAATGATCAAATGGGAAACACTGCTGCCCAGGAAGCTGCTGGAAATGATGGAAATCCACCAGATGGATCTAAACCCCAAGTGAAAAAACTCATTATGAGTGATGAATATTATCAAAGAGTTACCAGCGCCCTTGTAATGCGTCTTAGACAGCATGAAGAGGATGATGCGCAAGGAAACGGTTTGGCTGGGATGAGACAAAAGGATTTGATTCAATGGTACGTAGACCAACAAAATAAGAGAAACTACTACAGTTCAATGGAGGAGAGCTTAATTCGAAGAGAGGGTCATTTGATAGTGGTAGATGATGGGAAAGAAGCAGCCGCAGCAGCAGTACCCCCGGGCGCACCCAGAAATTACCGAATTTTAGCAGTGGCTCCTAATTATGTCCAAGAATGA | 2601 | 0.4444 | MEAFGGLMVDEKAVRVENAFLDFLKSFKSGQRNELNYEAEIDLMKYYDSNTMFVDFEHVIRFSDLLQQTISDEYLRFEPYLKNACKRFAMELKPSVVSDDSPDKDINIAFYNIPIIKRLRELGTGEIGRLVSVTGVVTRTSEVRPELVHGTFNCLDCGGVVKSVEQQFKYTEVPTICTNATCNNRTRWVLLRQESKFADWQRVRMQETSKEIPAGSLPRSLDVILRHEIVEQARAGDTVIFTGTVVAIPDIMALASPGERSECRRDPSQRKGSTAGNEGLSGLKALGVRDLNYRLAFIANSVQICDGRKEIDIRNRRKGADEDNQQFTDQDLEEIKRMRNTPDFFTKLVESIAPTVFGHADIKRAILLMLLGGVHKFTHEGINLRGDINVCVVGDPSCAKSQFLKYTAGIVPRSVYTSGKSSSAAGLTATVAKEPETGEFCIEAGALMLADNGICCIDEFDKMDIRDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPAGGRYDKSKPLKYNVALPPAILSRFDLVYVMIDDPDENTDYHIAHHIVRVHQKHEAALAPAFTTAELKRYIAYAKTLKPKLAPDARRLLVDSYVALRRGDTNPGSRTAYRMTVRQLEALIRLSEAIARCHLDNEVQPRHVRLAVKLLKTSIISVESNEIDLSEFQEENQDEGTGGGDGNDNNRDADDQVRNNAAQQAAENANDQVGNDAAQQAAGNANDPMGNEAQQAAGNANDQMGNTAAQEAAGNDGNPPDGSKPQVKKLIMSDEYYQRVTSALVMRLRQHEEDDAQGNGLAGMRQKDLIQWYVDQQNKRNYYSSMEESLIRREGHLIVVDDGKEAAAAAVPPGAPRNYRILAVAPNYVQE | 866 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aed4g0740 | 866 | Pfam | MCM AAA-lid domain | 569 | 654 | IPR041562 | - | |
| Aed4g0740 | 866 | Gene3D | - | 8 | 115 | - | - | |
| Aed4g0740 | 866 | Pfam | MCM N-terminal domain | 18 | 112 | IPR027925 | - | |
| Aed4g0740 | 866 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 354 | 655 | IPR027417 | - | |
| Aed4g0740 | 866 | MobiDBLite | consensus disorder prediction | 664 | 735 | - | - | |
| Aed4g0740 | 866 | Gene3D | - | 324 | 672 | IPR027417 | - | |
| Aed4g0740 | 866 | Pfam | MCM P-loop domain | 332 | 554 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | Pfam | MCM OB domain | 119 | 248 | IPR033762 | - | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 445 | 459 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 497 | 509 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 524 | 532 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 473 | 486 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 385 | 400 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 167 | 184 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 74 | 86 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 116 | 128 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 220 | 231 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aed4g0740 | 866 | PRINTS | Mini-chromosome maintenance (MCM) protein 6 signature | 279 | 300 | IPR008049 | GO:0003677|GO:0003678|GO:0005524|GO:0005634|GO:0006270|GO:0042555 | |
| Aed4g0740 | 866 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM6 | 10 | 823 | - | - | |
| Aed4g0740 | 866 | MobiDBLite | consensus disorder prediction | 257 | 277 | - | - | |
| Aed4g0740 | 866 | SUPERFAMILY | Nucleic acid-binding proteins | 20 | 250 | IPR012340 | - | |
| Aed4g0740 | 866 | MobiDBLite | consensus disorder prediction | 691 | 735 | - | - | |
| Aed4g0740 | 866 | Gene3D | - | 761 | 866 | - | - | |
| Aed4g0740 | 866 | CDD | MCM6 | 347 | 653 | - | - | |
| Aed4g0740 | 866 | ProSiteProfiles | MCM family domain profile. | 344 | 550 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 10 | 823 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | Pfam | MCM6 C-terminal winged-helix domain | 764 | 863 | IPR041024 | - | |
| Aed4g0740 | 866 | SMART | mcm | 115 | 655 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Aed4g0740 | 866 | Gene3D | - | 119 | 248 | IPR012340 | - | |
| Aed4g0740 | 866 | ProSitePatterns | MCM family signature. | 453 | 461 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Aed4g0740 | 866 | Gene3D | - | 146 | 198 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aed4g0740 | Aed-Chr4 | 6170442 | 6176317 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aed4g0740 | 1 | 866 | Core DNA Replication Machinery Family | AT5G44635 | 67.618 | 0.0 | 1215 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aed4g0740 | K02542 | - | gmx:100794021 | 1446.41 |