Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0732 ATGGAAGACAACATAGGAGGCAGTTCCTCAAACGACAACAACAACGGTGGCAGTGGCGACCGCATCATGAAGGAACAGGCGGAGCGGTTGCTGCCAATAGCCAACGTTGGGCGGCTCATGAAGCAGAATCTGCCGCAGAACGCAAAAATCTCGAAGGAGGCGAAGGAGACGATGCAGGAGTGTGTGTCGGAGTTCATAAGCTTTGTGACGAGCGAGGCCTCGGAGAAGTGCAGGAAGGAGAGGAGGAAGACGGTGAATGGTGATGACATTTGTTGGGCCTTGGCAACGCTTGGCTTTGATGACTATGCTGAACCAATGAGAAGGTACTTGCATAGATATAGAGAGGTTGAGGTCATTGACCATAATAGTAAGGTCAATAATCTTCAAGAAAGAGGGATTATTAATACTAATAGTACTCCTGATGATAATCAAGACAAGGATTATCAAGTGTTTAAATTGAGCAATAGGAATTAG 474 0.4641 MEDNIGGSSSNDNNNGGSGDRIMKEQAERLLPIANVGRLMKQNLPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYREVEVIDHNSKVNNLQERGIINTNSTPDDNQDKDYQVFKLSNRN 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0732 157 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 130 IPR027113 GO:0001228|GO:0006355|GO:0016602
Aed4g0732 157 MobiDBLite consensus disorder prediction 1 20 - -
Aed4g0732 157 SUPERFAMILY Histone-fold 28 137 IPR009072 GO:0046982
Aed4g0732 157 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Aed4g0732 157 Gene3D Histone, subunit A 20 154 IPR009072 GO:0046982
Aed4g0732 157 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 130 - -
Aed4g0732 157 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Aed4g0732 157 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Aed4g0732 157 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Aed4g0732 157 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0732 Aed-Chr4 6089708 6090181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0732 20 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.469 1.54e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Aed4g0732 CBFD_NFYB_HMF 5.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0732 K08065 - gmx:100794513 210.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0732 4 6089708 6090181 Aed4g0732 4 6089708 6090181 ECH
Aed6g2394 6 25569466 25569846 Aed4g0732 4 6089708 6090181 PCT