Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0728 ATGTTGTTTCCTTCCCAACGTTCGAAGCCCTTTCTCTACCTTAAGTCACTGATAAGAACACCGCTTCATCAAACTCCAAAACCGAACCCTTTCCTTTTCCCATCAACAAAACACGCCTCAACCACTTCACAACAACACCCATTCAAGGTTTCCTACCTCGTCAACACTTGCGGATTCTCTATAGAAACCGCTCTCAAAGCCTCCAAGTTCACTAATTTCGAAACCGCCGAAAAGCCCGATTCAATCATCGCCCTTTTCAGAGTCCACGGATTCTCCAACACCCAGATAAACAGCATCGTCAGAAGAGCACCCAACGTTCTCACATGCGACCCTCTCAAAAGGGTTTCCCCAAAGTTCGATTTTTTACGCTCCAAAGGGGCCTCAAGCTCCGACATTGTGGAACTCGTGAGTAAGAGCCCCAGAATCCTGTACGCGAACCTCGAGAATAACATCGTTCCTTCCTATGAATTGGTGCGAAGGTTCCTCAAATCCGATGAGAAAACCATGGATTGCATACGTGGCTGTGGACATTTCTTTGGGTCTGATCGCGTGGTACAGAATGTGAAATTGTTGATTGATGAAGGAGCCACTGACTCTGTAATTGCCTTTTTGTTGCAGAGAAGGCTTTGTATAATTCTGTGTTCTGGATTCAAGGAGGTGTTGGATGAGGTTAAGGAAATGGGGTTTGAGCCTTTCAAGTTGAAGTTTGCGATCGCGCTGCTGGCGAAGAAGATCGTTCCAAAATCGCAGTGGGAGGCGAAAGTTGATGTCTTTAGGAGATGGGGTTGGTCTGAAGAATTGGTTCTTGGTATGTTCAAGAGGCAACCCCTGTTTATGTTAGTGTCACAAGATAAGATTGATAGGGTTATGAGATTTTGGGTTAAGCAGTTAGGTTGGGACTCTTTGGTCCTTGCCAAGAAGCCTGAGATTTTTGGATTTAGCTTGGAGAGAAGGATCATTCCAAGGGCTCTTGTTGTTCGGTATTTAGTCGCGAAAGGCTTGAGGAAAAAGAGTGCCAGCATGATTACCCCGTTTTCTGTTTCTGAGAAGGTGTTTATTGAAAAGTATTTGATGCGTTTTAAGGAGGAAGAAGTGGAACTATTGAAGCTTTACCAGGGGAAAATGAGTGTTCATGGAAAAAAGGAGGATGGTGCAGCTCCTCTAACCATAGTACGTCGTGTGACACACAACATCTTACTGATGCTTGAGAATGGAGTGAGTGAATCAAACGTTGCACTATTGCTTCGGAACCGTAGTAAGATGGTGTTCGGGGCAATGTGTATTCTTGAAGTGTTGGGGGAAGTGAAGGATATGGGGTTTGATCCTTCAAAATCACCCTTTGCTCTAGCATTGCTTGCCATGAAATGTGTGAGTCAAAACACGTGGAAGGAGAAAGCTGATGCCTTTAAGAAATGGGGTTGGTCCGATGAAGCCTTGCATCAAGCTTTTAGAAGGCGCCCTTACTGTATGATGACATCCATTGACAAAATAAATACTGTGATGAACTTTTGGGTCAATCAGATGGGTTGGGATGCTTTGCACCTTGTCCAAGTTCCGAAGATTTTCGGGTCGAGCATGGAGAAAACGATCATTCCAAGGGCTCTTGTTGTCCAGTACTTACTCGCCAATGGCTTGAGGAAAAAGAGTGCCAGCTTTCATACCCCAATTGCGGTTTCTGAAAAGGTGTTTATAGAGAGTTCGAAGAAGTCCATTATGAAAAAAAAAGAGGTTTAA 1734 0.4446 MLFPSQRSKPFLYLKSLIRTPLHQTPKPNPFLFPSTKHASTTSQQHPFKVSYLVNTCGFSIETALKASKFTNFETAEKPDSIIALFRVHGFSNTQINSIVRRAPNVLTCDPLKRVSPKFDFLRSKGASSSDIVELVSKSPRILYANLENNIVPSYELVRRFLKSDEKTMDCIRGCGHFFGSDRVVQNVKLLIDEGATDSVIAFLLQRRLCIILCSGFKEVLDEVKEMGFEPFKLKFAIALLAKKIVPKSQWEAKVDVFRRWGWSEELVLGMFKRQPLFMLVSQDKIDRVMRFWVKQLGWDSLVLAKKPEIFGFSLERRIIPRALVVRYLVAKGLRKKSASMITPFSVSEKVFIEKYLMRFKEEEVELLKLYQGKMSVHGKKEDGAAPLTIVRRVTHNILLMLENGVSESNVALLLRNRSKMVFGAMCILEVLGEVKDMGFDPSKSPFALALLAMKCVSQNTWKEKADAFKKWGWSDEALHQAFRRRPYCMMTSIDKINTVMNFWVNQMGWDALHLVQVPKIFGSSMEKTIIPRALVVQYLLANGLRKKSASFHTPIAVSEKVFIESSKKSIMKKKEV 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0728 577 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 21 377 - -
Aed4g0728 577 PANTHER CGI-12 PROTEIN-RELATED 21 377 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 Pfam mTERF 84 287 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 Pfam mTERF 249 352 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 Pfam mTERF 457 563 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 PANTHER CGI-12 PROTEIN-RELATED 392 566 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 392 566 - -
Aed4g0728 577 Gene3D Transcription termination factor 3, mitochondrial 164 364 IPR038538 -
Aed4g0728 577 Gene3D Transcription termination factor 3, mitochondrial 389 574 IPR038538 -
Aed4g0728 577 SMART mt_12 512 546 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 SMART mt_12 202 230 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 SMART mt_12 480 511 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 SMART mt_12 133 164 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Aed4g0728 577 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0728 Aed-Chr4 6069908 6077755 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aed4g0728 mTERF 1.9e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0728 K15032 - gmx:102666739 649.432