Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0679 ATGCTTTGTCAAGGCTTGATAATTTGTTGGAAGCAAAAGCTAAGCAAGGGGTCCAGTGGTTATGATGATCAAGTAGTTACAAAGATTTACATTCTTCTCTACAAAGAGGTGTCTCTTGCTTTGAAAATCAACAGTGTTTATAGCAAGAAAAGGCTTCTTAGCATTCATGAGAATGTGAGGGTATTACGCTATCCTGACCACTTTTCTACTGGTGTTTACCTGTGGTCACATCATGAAAAACTTGTCATTATTGATAATCATATTTGCTTTATTGGAGGACTGGATTTATGCTTTGGTCGTTATGACACATCTGATCATAAAGTGGGAGATTTCCCTCCTCTAAACTGGCCTGGAAAAGACTATTATAACCCAAGAGAATCTGAACCAAATTCTTGGGAAGATACAATGAAAGATGAATTGGAACGTGAAAAGTATCCTCGTATGCCTTGGCATGATGTTCACTGTGCCCTTTGGGGACCACCTTGCCGTGACAATGCTAGGCACTTTGTTCAGCGATGGAATTATGCCAAGAGGAGCAAAGCTCCATATGAGCAAGCAATTCCATTACTTATGCCTCAGCATCATATGGTTATTCCACATTACTTGGGAACAAACAGAGAGAGACAGATTGAAAGTAGGAACATTGACAATCATAGAGGTCTCAAGAGAAATGATTCATTTTGCTCATCTTCCCAAGACCAAGATATTCCTCTACTTCTGCCTCAGGAGTCTGATGGGTTGGATAATCATGAAGGAGACCAAAAATTGAATGGGGTAATCTCCTTTTCACATCACCCTGACAAGCCACCAAGAAAAATCAGCAGTGGTCTTCCATTCTCGTTCCGGAAGGCCAAAATTGTAGCAGTTGGTCCAGATACACCAATGAAGGGCTTTGTAGATGATCTAGGTTCTGAGCATGATTGTGAGAAAATGTCTCTGGATAGAGTGGGTCATTTGGATTTACAAAATACAGACTCAGAATGGTGGGAAACGCAAGAACGGGGTGACCAAGGAGGTTTTGCTGAGGAACCAGGACAAGTTGGTCCTCTTGCTTCCTGCCGTTGCCAAGTTATTAGGAGTGTGAGTCAATGGTCTGCTGGAACGAGTCAAACCGAAGAGAGCATCCACAGTGCTTATTGCTCTCTTATTGAGAAAGCTGAATATTTCATCTACATTGAGAATCAATTTTTTATCTCAGGTCTTTCTGGAGATGAGTTGATACGGAATCGTGTGTTAGAAGCTTTATATCGACGGATTATGCGAGCTTTCAATGAAAAAAAATCTTTCAGGGTTATAGTTGTCATACCTCTCCTGCCTGGCTTCCAGGGTGGTCTTGATGATAGTGGTGCCGCATCTGTGAGAGCCATAATGCATTGGCAGTATCGAACCATTTGCAGAGGGCAGAATTCTATCTTGCATAACCTTTATGAACTTCTAGGTTCTAAAATACATGACTACATCTCTTTCTATGGCCTAAGGTCTTATGGTAGACTCTCTAATGGTGGCCCTGTGGCAACGAGCCAGGTGTATGTTCACAGTAAAATCATGATTGTTGATGATTGCATTACATTGATTGGATCTGCTAATATTAATGATAGGAGCTTACTTGGCTCCAGAGATTCTGAGATTGGTGTAGTTATAGAAGACAAAGAGTTTATTGATTCTTATATGGATGGAAAACCTTGGAAAGCAGGAAAATTTTCCTTGACTCTCCGATTGTCATTATGGTCTGAACACCTGGGTTTCCCTACAGGAGAGGTTAAACAAATAATGGACCCAGTTGTTGAATCTACTTACAGGGATATTTGGATGGCAACAGCCAAGACAAATAGTACAATTTACCAGGATGTCTTTTCTTGCGTACCTAATGATCTGATACACACCAGACTTGCTCTTAGACAAAGTGTGGCTTTTTGGAAAGACAAAATTGGTCACACTACCATTGATTTAGGAATAGCCCCAGAAAAATTAGAATCCTATAACGATGACATTGAGAACACAGAACCCTTGGAGAGATTAGCAGCAGTGAAGGGTCATCTGGTCTCTTTTCCCTTGGAGTTCATGTGTCAGGAAAGTCTAAGACCTGCTTTTAACGAAAGTGAATACTACGCTACTCAAGTTTTCCATTGA 2130 0.4089 MLCQGLIICWKQKLSKGSSGYDDQVVTKIYILLYKEVSLALKINSVYSKKRLLSIHENVRVLRYPDHFSTGVYLWSHHEKLVIIDNHICFIGGLDLCFGRYDTSDHKVGDFPPLNWPGKDYYNPRESEPNSWEDTMKDELEREKYPRMPWHDVHCALWGPPCRDNARHFVQRWNYAKRSKAPYEQAIPLLMPQHHMVIPHYLGTNRERQIESRNIDNHRGLKRNDSFCSSSQDQDIPLLLPQESDGLDNHEGDQKLNGVISFSHHPDKPPRKISSGLPFSFRKAKIVAVGPDTPMKGFVDDLGSEHDCEKMSLDRVGHLDLQNTDSEWWETQERGDQGGFAEEPGQVGPLASCRCQVIRSVSQWSAGTSQTEESIHSAYCSLIEKAEYFIYIENQFFISGLSGDELIRNRVLEALYRRIMRAFNEKKSFRVIVVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYELLGSKIHDYISFYGLRSYGRLSNGGPVATSQVYVHSKIMIVDDCITLIGSANINDRSLLGSRDSEIGVVIEDKEFIDSYMDGKPWKAGKFSLTLRLSLWSEHLGFPTGEVKQIMDPVVESTYRDIWMATAKTNSTIYQDVFSCVPNDLIHTRLALRQSVAFWKDKIGHTTIDLGIAPEKLESYNDDIENTEPLERLAAVKGHLVSFPLEFMCQESLRPAFNESEYYATQVFH 709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0679 709 SUPERFAMILY Phospholipase D/nuclease 28 193 - -
Aed4g0679 709 Gene3D Endonuclease Chain A 28 196 - -
Aed4g0679 709 PANTHER PHOSPHOLIPASE D 28 706 IPR015679 -
Aed4g0679 709 PANTHER PHOSPHOLIPASE 28 706 - -
Aed4g0679 709 Pfam PLD-like domain 380 556 IPR025202 -
Aed4g0679 709 PIRSF PLD_euk 25 213 IPR016555 GO:0004630|GO:0006654|GO:0048017
Aed4g0679 709 PIRSF PLD_euk 200 709 IPR016555 GO:0004630|GO:0006654|GO:0048017
Aed4g0679 709 Pfam Phospholipase D Active site motif 73 100 IPR001736 GO:0003824
Aed4g0679 709 SUPERFAMILY Phospholipase D/nuclease 347 558 - -
Aed4g0679 709 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 507 534 IPR001736 GO:0003824
Aed4g0679 709 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 73 100 IPR001736 GO:0003824
Aed4g0679 709 SMART pld_4 73 100 IPR001736 GO:0003824
Aed4g0679 709 SMART pld_4 507 534 IPR001736 GO:0003824
Aed4g0679 709 CDD PLDc_vPLD1_2_yPLD_like_2 367 551 - -
Aed4g0679 709 Gene3D Endonuclease Chain A 328 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0679 Aed-Chr4 5741198 5751418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0679 27 709 Phospholipase D Gene Family (Wang group) AT3G05630 61.974 0.0 850
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0679 K01115 - gmx:100780514 1308.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0679 4 5741198 5751418 Aed4g0679 4 5741198 5751418 ECH