Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0663 ATGCTATATTATCTGCTGCAGCCAAAAAAAATTCCATTACCCTTTTCTCTGTTTCTTCCCCTGAACTCCTTAAACAACTCACTCTTTTATATTTTTATATACTTTTTGTGTTTCACTTCTTTCCATGATGCCAGTTTCAACCATGTGAAGTTGTTGCGTGGTGTCTGTGTTTGTTGTTGTTGTGTACTGTTTTGGATCTTCAGAGCCATGAATCTCAGCAACGGCAAGGGATCCACTTCGAGTTCTCCTCTGAAAGCCGCCGGAGATGCTGTCTCCGACCAGTTTCCGGCAGGTCTCCGGGTGCTGGTCGTGGATGATGACCCCACGTGCCTTATGATCCTTGAGAGGATGCTTCGTGCTTGTCTCTATGAAGTGACGAAATGCAATCGAGCTGAGACTGCATTGTCTTTTCTGAGAGAGAACAAAAGCGGGTTTGATATCGTTTTAAGCGATGTGCACATGCCGGATATGGATGGATTCAAGCTTTTGGAGCATATTGGGTTGGAGATGGACCTTCCAGTTATCAGTAAGCATTGTTTTGATTGCTTTGTTGTAGATGTGGAGCAATCGGGTAGCGTGGAAGAAGGAGATAGGCCTCTAAAGGGATCTGATGATGGAGATTACTCATCTTCAGTGAATGAGGCCAAAAGCTTAAAGAAGAGGAGGGATGAGGAAGATGAAGGAGATGAGAGGGACGATAGCTCCACGTTGAAGAAGCCGCGAGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTTATGGCTGCTGTGAATCAACTTGGAATTGATAAGGCTGTCCCTAAAAAGATTTTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCACCTTCAGAAATACCGTTTGTATCTTAGAAGGCTGAGTGGTGTTTCTCAGCAGCAGGGTAACTTGAGCAACTCCTTCCTCAGCTCACAAGAAGCAGCATTTGGGGCAACTTCAATCAATGGATTTGACCTTCAAACTCTATCAGTTGCTGGCCAGCTCCCAGCACAAAGTCTAGCCAAGCTTCAAGCTGTGGGACTTGGCCGGACAACCGTTAAAGCCAGTATGCCCATGTCTTTATCTGATCAAAAGAACCTTTTCAGTTTTGAGAACCCAAGATTGAGATTTGGAGAAGGTTCACTACAACATTTAAGCAACAATCAACCATCAAACTTGCTTCATGGAATCCCTACCAACATGGAGCCAAAACAACTTGCCAATTTGCACCAATCTACCCAACCCCTTGGTAACTTGAATATGCGAGTCAACGCTCCTGCCACACAAAACAACCCCTTGTTGATGCAGATGTCTCAGTCTCAACCAAGAGGTCAGTTGCTAAATGGCATTTCTAATGGTGTTTTGGGAAATGGGATTGCTGGCACCAACAACATAACTACTACTTATAATCCAGTTCAACAAAACTCTTCATTGTTGAGTTTTCCCATGAACCAAACCAATGAAATGTCTGCTGCCAGTAGTTTCCCTCTTAGAAGCACTCCAGGTATAACTAGTATCCCAACTAAAGGCATGTTTAGTGAAGAAGGTACCTCTGGTATCAAAGGACCTGGTGGATTTGTTCAAGGTGGTTATGACATGTTTAATGAACTCCACCATCAGAAGTCCCATGATTGGGACTTAACAAACACAGGCATGACATATGATGCTTCTCACCATTCAAATCCTTTACAAGGTAACATTGATGTCTCACCATCAGTTTTGGTCCATCATCAGAGTTTTCCCTCTATGCAACAACAGACCGTACATAATAGAGATACTACTTCAATTGGAAAAGCTATGTTCTCCACAGGTGAAGGCATGCATCAAAATAATAATCTCCTAAATGTTGGTCAACACCACAATAACCTTTTTGTTGACAATTCAGTAAGGGTTAAGGCTGAAAGAACTCCCGATCCAATCTCCCAGATTAATAACATCTTCTCTGAGCAATATGGCCAGGAGGATCTTGTCAGTGCATTTCTGAAACAGCAAGAAGGCGTTGGAGCATCTGAAAATGATTTTGACTTTGATGGATATTCCTTAGACAACATTCAGGTTTAG 2070 0.4295 MLYYLLQPKKIPLPFSLFLPLNSLNNSLFYIFIYFLCFTSFHDASFNHVKLLRGVCVCCCCVLFWIFRAMNLSNGKGSTSSSPLKAAGDAVSDQFPAGLRVLVVDDDPTCLMILERMLRACLYEVTKCNRAETALSFLRENKSGFDIVLSDVHMPDMDGFKLLEHIGLEMDLPVISKHCFDCFVVDVEQSGSVEEGDRPLKGSDDGDYSSSVNEAKSLKKRRDEEDEGDERDDSSTLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQQQGNLSNSFLSSQEAAFGATSINGFDLQTLSVAGQLPAQSLAKLQAVGLGRTTVKASMPMSLSDQKNLFSFENPRLRFGEGSLQHLSNNQPSNLLHGIPTNMEPKQLANLHQSTQPLGNLNMRVNAPATQNNPLLMQMSQSQPRGQLLNGISNGVLGNGIAGTNNITTTYNPVQQNSSLLSFPMNQTNEMSAASSFPLRSTPGITSIPTKGMFSEEGTSGIKGPGGFVQGGYDMFNELHHQKSHDWDLTNTGMTYDASHHSNPLQGNIDVSPSVLVHHQSFPSMQQQTVHNRDTTSIGKAMFSTGEGMHQNNNLLNVGQHHNNLFVDNSVRVKAERTPDPISQINNIFSEQYGQEDLVSAFLKQQEGVGASENDFDFDGYSLDNIQV 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0663 689 Gene3D - 99 176 - -
Aed4g0663 689 MobiDBLite consensus disorder prediction 193 236 - -
Aed4g0663 689 PIRSF RR_ARR_type-B 73 179 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aed4g0663 689 PIRSF RR_ARR_type-B 180 681 IPR017053 GO:0003677|GO:0003700|GO:0009736
Aed4g0663 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 77 177 - -
Aed4g0663 689 SUPERFAMILY Homeodomain-like 236 296 IPR009057 -
Aed4g0663 689 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 238 295 IPR017930 -
Aed4g0663 689 Gene3D - 236 298 - -
Aed4g0663 689 Pfam Myb-like DNA-binding domain 241 291 IPR001005 -
Aed4g0663 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 186 657 - -
Aed4g0663 689 CDD REC_typeB_ARR-like 101 175 - -
Aed4g0663 689 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 239 292 IPR006447 GO:0003677
Aed4g0663 689 Pfam Response regulator receiver domain 101 175 IPR001789 GO:0000160
Aed4g0663 689 SUPERFAMILY CheY-like 98 175 IPR011006 -
Aed4g0663 689 MobiDBLite consensus disorder prediction 214 236 - -
Aed4g0663 689 ProSiteProfiles Response regulatory domain profile. 100 226 IPR001789 GO:0000160
Aed4g0663 689 SMART REC_2 99 276 IPR001789 GO:0000160
Aed4g0663 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 77 177 IPR045279 GO:0009736
Aed4g0663 689 PANTHER TWO-COMPONENT RESPONSE REGULATOR 186 657 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0663 Aed-Chr4 5600883 5605033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0663 134 689 Response Regulator Gene Family AT3G16857 43.075 5.84e-129 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aed4g0663 Response_reg 7.9e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0663 - K14491 gmx:100781087 1017.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0663 4 5600883 5605033 Aed4g0663 4 5600883 5605033 ECH
Aed6g2345 6 25290829 25295263 Aed4g0663 4 5600883 5605033 PCT