Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0656 ATGGTTATCGTTCTCCATGGGATGCGCTTTACTCCACAACCCTCCCCGCCACTTCTATCTTCATTTTTTTCTCTTCATAAATTTTGTAGTTTGTTCACGATTCTACCTGTGTCTGGAGTGGGGTTGAGATTTTGGAGAAATGGGTTTGGATCTGTGAGAGCTAAGTTTAAAGATCTGCAAACGAATTGGGCTGTTATTGCCAACAACAGAATGTCGGAAGGAACCAGTCTAGTGCTGGAATCATCTGAAAATGGCACAGATTTGTCTCAGGATGATATTGGCACCATTGAGGAAACACCAGAGGAAACAATTTTGTCAAGACAAACTTCTGTCAACCTTGTTCCTTTTATTGGTCAAAGATTTGTATCTCAAGAAGCAGCTTATGAATTTTATTGCAGTTTTGCTAAACAATGTGGCTTTTCAATTAGACGGCACCGAACTCGAGGGAAAGATGGGGTTGGCAGGGGAGTTACAAGGAGGGATTTTACTTGCCATCGTGGTGGATATCCCCAGATTAAACCTTCTGATGAGGTGAAGGTGCAAAGGAACCGCAAATCGTCTCGCTGTGGTTGCCAAGCATACATGCGTATTGTGAAAAGGGCAGATTTTGATGTCCCCGAATGGCGTGTTACTGGTTTTAGGAACATCCACAATCATGAGTTGTTAAAATCCAATGAGGTGCGTCTTCTTCCAGCATATTGTCCTATATCTCCTGACGACAAGAGTCGTATATGCATGTTTGCTAAAGCTGGAATGTCAGTAAGGCAAATGCTAAGATTGATGGAGCTAGAGAAAGGCATCAAACTCGGTTGTCTTCCTTTTACGGAGATAGATGTAAGAAACCTGTTGCAGTCTTTCAGAAATGTGGATAGAGATAATGATGCCATTGATTTGATTGCTATGTGCAAGAGGTTAAAGGATGAAAACCAAAACTTCAAGTATGAATTCAAGATAGATAGTAATAACAGGCTTGAGCATATTGCATGGTCCTGCAGTTCATCCATTCAATCATACGAGGCATTTGGTGATGCTGTGGCTTTCTTGGGCTTCATGAAAGGAAAGGCTCCCCAAACAATATTGACGGATCATAACATGTGGCTGAAAGAAGCTATTGCAGTTGAATTGCCTGAAACTAAACATGCCTTTTGTATATGGCATATTCTTTCTAAGTTCTCTGACTGGTTTTCTTTATTTCTTGGATCACAATATGATGAGTGGAAAGCTGAGTTCCACCGGATCTACAATTTGGAACTGGTGGAAGATTTTGAAGAGGGCTGGAGGCAAATGGTTGATAAATATGGACTCCATGCAAATAAACATATTATCAGCCTATATTCATTAAGGACATTTTGGGCTTTACCATTCTTGAGGCGTTACTTCTTTGCAGGATTGACTAGTACATTTCAGTCTGAGTCCATTAATGCTTTCATCCAACGGTTCTTGAGTGCCCAGTCTCAACTAGATCGCTTTGTGGAGCAAGTGACAGATATTGTTGATTTTAATGACCGAGCTGGAGCAAAGCAAAAGATGCAAAGGAAACTGCAGAAAGTGTGCCTCAAGACAGGTTCACCTATCGAATCCCATGCTTCCACTGTACTTACTCCTTATGCCTTAAGTAAGCTCCAGGAAGAGCTAGTTTTGGCGCCACAATATGCATCCTTTCTGGTCGATGAAGGTTGTTTCCAGATCAGACACCACTCCCAGTCAGATGGAGGGTGCAAAGTATTTTGGGTTCCTTGTCAAGAGCACATCAGCTGCAGCTGCCATCTGTTTGAGTTTTCAGGCATCCTATGTAGACACGTGCTACGTGTCATGTCAACCAATAACTGTTTTCACATCCCTGATCAATATTTACCAGCCCGTTGGCGAGGCAATAATTTATCTTCTGTTAACCACTTCCGGGGTACAATCAGTAGGGATCAGCCTGAAAGGATACAATTTTTGGAATCCATGGTTTCAACGTTTTTAGTGGAATCCATGGAAACCGAGGAACGTCTTGATGTTGCTTGTGAGCAGATTTCCATGGCTCTATCACGCATGAAAACCCTTCCTAGGTCCCCACATGGGGTGAATGACATTGCATATGGTTATCCATCAGATTCATTAATTCTGCCAGAGGTAGAAGACACTGACGGAATGATTCACGGCTTTACAATCACAAATCCCCATGATACTATCACTACAGGAAAGCTAAAGGAAAGAAGGGCGAGAGATGGCCTTGATCTCACGAGGAAGCGTAGGCAGTACTCAGCACCATTGTGTGCTCAATATGGACATGATGCGTCTGATTGCTCAATAATGGCGGGTGACACTATGAGCGGAGATGCATTAGGAATCTTCTTCGCCCAGAGAAACTTTACTTAG 2364 0.4255 MVIVLHGMRFTPQPSPPLLSSFFSLHKFCSLFTILPVSGVGLRFWRNGFGSVRAKFKDLQTNWAVIANNRMSEGTSLVLESSENGTDLSQDDIGTIEETPEETILSRQTSVNLVPFIGQRFVSQEAAYEFYCSFAKQCGFSIRRHRTRGKDGVGRGVTRRDFTCHRGGYPQIKPSDEVKVQRNRKSSRCGCQAYMRIVKRADFDVPEWRVTGFRNIHNHELLKSNEVRLLPAYCPISPDDKSRICMFAKAGMSVRQMLRLMELEKGIKLGCLPFTEIDVRNLLQSFRNVDRDNDAIDLIAMCKRLKDENQNFKYEFKIDSNNRLEHIAWSCSSSIQSYEAFGDAVAFLGFMKGKAPQTILTDHNMWLKEAIAVELPETKHAFCIWHILSKFSDWFSLFLGSQYDEWKAEFHRIYNLELVEDFEEGWRQMVDKYGLHANKHIISLYSLRTFWALPFLRRYFFAGLTSTFQSESINAFIQRFLSAQSQLDRFVEQVTDIVDFNDRAGAKQKMQRKLQKVCLKTGSPIESHASTVLTPYALSKLQEELVLAPQYASFLVDEGCFQIRHHSQSDGGCKVFWVPCQEHISCSCHLFEFSGILCRHVLRVMSTNNCFHIPDQYLPARWRGNNLSSVNHFRGTISRDQPERIQFLESMVSTFLVESMETEERLDVACEQISMALSRMKTLPRSPHGVNDIAYGYPSDSLILPEVEDTDGMIHGFTITNPHDTITTGKLKERRARDGLDLTRKRRQYSAPLCAQYGHDASDCSIMAGDTMSGDALGIFFAQRNFT 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0656 787 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 77 347 - -
Aed4g0656 787 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 346 760 - -
Aed4g0656 787 Pfam SWIM zinc finger 581 606 IPR007527 GO:0008270
Aed4g0656 787 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 77 347 IPR031052 GO:0006355
Aed4g0656 787 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 346 760 IPR031052 GO:0006355
Aed4g0656 787 ProSiteProfiles Zinc finger SWIM-type profile. 576 609 IPR007527 GO:0008270
Aed4g0656 787 SMART 26again6 584 611 IPR006564 GO:0008270
Aed4g0656 787 Pfam MULE transposase domain 335 389 IPR018289 -
Aed4g0656 787 Pfam FAR1 DNA-binding domain 129 222 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0656 Aed-Chr4 5564706 5569279 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Aed4g0656 FAR1 7.6e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0656 - - gmx:100778434 1352.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0656 4 5564706 5569279 Aed4g0656 4 5564706 5569279 ECH