LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed4g0655	ATGAGTGCATCAGAAAACCCTACTGAGGGTAAAGCTGCTGCCGCTGCTTCTTCTTCACCAACAACAACTTTAAAACTATTTGGTTTCCTACTAACCCCAGGCAAAAGTGGTAATGATAATAATAACGAAGATATTGATGATGACATGGCAGGTGCAGTTCCTCCTCCTTACCATTACAATAGATTCAAATGCGAGTTTTGCAACCGCGAATTCTCGAATTCACAAGCTCTCGGTGGGCACAAAAATGCGCACAAGAGAGAGCGCAAAATAGCCGCTCTTTCACCCTTGGGATCATATCGTCCACGGTTCAAACCACCTTACTCCCCAATCGTGGTTCCGCACGGAGCTGGGTCATCAGGACCGTTGGTTCGTCAACGCGAGGAGCTGCCTCGGTTTGATGTTGATCTTAACTTGAACTTGAGCTTGCCTCGCTCACCTGATCACAGGGAATTGGCCAAGTGCAGAACTTGA	471	0.4735	MSASENPTEGKAAAAASSSPTTTLKLFGFLLTPGKSGNDNNNEDIDDDMAGAVPPPYHYNRFKCEFCNREFSNSQALGGHKNAHKRERKIAALSPLGSYRPRFKPPYSPIVVPHGAGSSGPLVRQREELPRFDVDLNLNLSLPRSPDHRELAKCRT	156

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed4g0655	156	MobiDBLite	consensus disorder prediction	29	52	-	-
	Aed4g0655	156	ProSitePatterns	Zinc finger C2H2 type domain signature.	64	84	IPR013087	-
	Aed4g0655	156	PANTHER	ZINC FINGER PROTEIN 8-LIKE	8	116	-	-
	Aed4g0655	156	MobiDBLite	consensus disorder prediction	1	20	-	-
	Aed4g0655	156	SUPERFAMILY	beta-beta-alpha zinc fingers	60	89	IPR036236	-
	Aed4g0655	156	Gene3D	Classic Zinc Finger	60	106	-	-
	Aed4g0655	156	ProSiteProfiles	Zinc finger C2H2 type domain profile.	62	89	IPR013087	-
	Aed4g0655	156	Pfam	C2H2-type zinc finger	61	86	-	-
	Aed4g0655	156	PANTHER	ZINC FINGER PROTEIN 5	8	116	IPR044299	GO:0010090

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed4g0655	Aed-Chr4	5553976	5554446	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed4g0655	18	111	C2H2 Transcription Factor Family	AT1G67030	35.354	1.20e-12	60.8

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Aed4g0655		zf-C2H2_6	8.3e-06	CL0361

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed4g0655	-		-	gmx:102660351	133.65