Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0650 ATGGGGAGATCTCCTTGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAAATCTTGACCGATTATATCCAAGACAATGGTGAAGGCTCGTGGAAAACCTTGCCTAAAAATGCAGGTTTGTTGAGGTGTGGGAAGAGTTGTAGACTGAGATGGATCAACTATTTGAGAGCTGACGTGAAAAGAGGTAACATCACTCCTGAGGAAGAAGAGATCATTGTCAAATTGCATGCTGTTCTTGGCAATAGGTGA 267 0.4345 MGRSPCCEKVGLKKGRWTAEEDKILTDYIQDNGEGSWKTLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPEEEEIIVKLHAVLGNR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0650 88 CDD SANT 16 61 IPR001005 -
Aed4g0650 88 PANTHER MYB TRANSCRIPTION FACTOR 2 88 - -
Aed4g0650 88 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Aed4g0650 88 SMART sant 13 63 IPR001005 -
Aed4g0650 88 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aed4g0650 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Aed4g0650 88 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aed4g0650 88 Gene3D - 13 66 - -
Aed4g0650 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 88 IPR017930 -
Aed4g0650 88 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0650 Aed-Chr4 5531241 5531623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0650 1 88 MYB Transcription Factor Family AT3G62610 81.818 1.56e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aed4g0650 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0650 K09422 - gmx:100819736 187.578