Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0645 ATGATGATGGCACACAACTTAACGGGGCAGCTTGTGGGTTCAGAGATTCATGGCTTTCACACGTTGGAGGATTTGGAGGTTAGTAATACTATGGAGGAAGCAAAAAGCAGATGGCTTCGTCCCAATGAGATTCATGCCATACTCTTTAATCACAAATATTTCAAGATCAATGCCAAGCCGGTGAATTTACCCGAAAGTGGTACTATTGTACTATTTGACCGCAAGATGCTTAGGAACTTCAGAAAAGATGGGCACAATTGGAAAAAGAAAACTGATGGGAAAACTGTTAAAGAAGCCCATGAACACTTAAAAGTTGGCAATGAAGAAAGGATCCACGTATATTATGCACATGGCCAAGATAAGCCAACCTTTGTTCGTAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTTGTTCATTATCGTGAAACACAAGAGTTACAATTGCAAGGTTCTCCTGTTACACCTGTAAATTCAATTTCAAATTCAAGTTCTGTCTCTGATCCTGCTGCATCTTTGATTCCCTCAGAAGACATAGATTCTGGAGTGAACAGTGCTTATACTGTCGAGCTTAATGAAAATTTAACAGTCAAAAGTCACGAGCAGAAGCTTCATGAGATTAATACACTTGATTGGGATGAGCTAGTGGTTTCAAATGTCAACACTTCTACTACATCTAATGGAGGCAATGTTCCATATTCACTTCAACAAAATCAAAGTTTACTAAATGGAAGCTTTGGCAATGTACCGAGTAATCCTTCAGCAGAAATGCCTTCTTTTGGTAATTTAACTGTGCCAGTTTCTGTGAGCAATGGTGTTCCTTACAGTTTCTCAGGAAGTGTTAATCTTCTGAAAAATAGTCCTATATCTTCTGGTGGTGTTGATATCTTGGGTTCTTTGGTCAATGAAGGCTTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACAAAATACCAGATACAGCATGTTCCATAGATGAGTCGGTTCTTGAATCATCAATTCCTTCTGTTCATGAACCATATTCATCACTGGTGGCAGATAGTCAGCAATCTTCTCTGCCGGAACAAGTATTTAATCTCACTGAGGTGTCCCCTGCATGGGCATCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCATAATAACTATCAACACCTTGCAAAATCCAACCTACTGTGTGTCTGTGGTGATGTAAGTGTTCCTGTAGAAATTGTTCAGGTTGGGGTTTACCGGTGCTGGGTATCGCCACACTCTCCTGGATTAGTCAATCTCTATTTGAGCTTTGATGGCCATAAGCCCATTAGCCAAGTTGTTAATTTTGAGTATCGTACTCCTATTTTGCATGATCCAACTGCTTTAATGGAAGAGAAATTCAACTGGAATGAGTTTCGACTTCAGATGAGGCTTGCTCAGTTGCTCTTTTCTACAGACAAGAGCCTTAACATTTTCTCAAGTAAAGTATCACATAATGCACTGAAAGAGGCTAAAAAATTTTCCATCAAAACATCATTTATCTCCAAAAGTTGGCAATTCTTGATGAAGTCAATTGACGACAAAACAATTCCATTTTCACAAGTAAAAGATGCCTTGTTTGAAATTGCATTGAAAAACAAATTAAAGGAATGGCTTTTGGAACGAATTATCTTAGGCGGCAAGACTACTGAATATGATGCGGAAGGGCAAGGTGTAATTCATTTGTGTGCAATGCTGGGATATAATTGGGCAATCTCCTTATTTTCTTGGTCAGGCTTCTCACTCGATTTCCGTGACAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATCATGGAATGGAGAAAATGGTTGCAACTCTGTTGTCTTCTGGGGCAAGGCCAAACTTGGTAACAGATCCAACTCCACAATATCCTGGTGGATATACTGCGGCTGATCTTGCTTGTATGAAGGGATGTGAAGGCTTAGCTGCTTACCTTTCTGAGAAGTCTCTGGTTGGGCAGTTCAATGATATGAGCTTAGCTGGAAATATCAGTGGCTCACTGGAAACTAGCTCAACTGATCCAGTAAATCCTGAGAACTTTACCGAGGACCAACTGTACATAAAGGATACTTTGGAAGCTTACCGTACAGCTGCTGAGGCAGCAGCACGCATTCAAGCTGCATTTAGGGAGCATTCGTTTAAATTACGATATCAGGAAGTTGAAATTATCACCCCAGAGGAAGAAGCACGTCAAATAGTAGCAGCAATGAGGATTCAACATGCCTTTCGCAACTATGAGACCAAAAAAAGGATCACAGCTGCTGCTCGGATTCAGGTTAGATTCCGTACATGGAAGTACCGTAGAGAATTTCTCCACATGCGGCGCCAGGCTATTAAAATTCAAGCTGCTTTCAGGGGCTTTCAAGCACGGAAGCAATATCGGAAAATCATATGGTCGGTTGGGGTGCTTGAGAAAGTGATCCTGCGTTGGCTTTTAAAGAGAAAAGGCTTCCGTGGTCTCCAGGTTAAACCTGACGAGGACGAGCAGCAGGAAAGTGATACAGTTGTAGAGGAGAATTTCTTTCGGACCGGCCGGAAACAAGCTGAAGAACGCGTTGAGAGTCCTGGTATTATTTAA 2613 0.4133 MMMAHNLTGQLVGSEIHGFHTLEDLEVSNTMEEAKSRWLRPNEIHAILFNHKYFKINAKPVNLPESGTIVLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDKPTFVRRCYWLLDKSLEHIVLVHYRETQELQLQGSPVTPVNSISNSSSVSDPAASLIPSEDIDSGVNSAYTVELNENLTVKSHEQKLHEINTLDWDELVVSNVNTSTTSNGGNVPYSLQQNQSLLNGSFGNVPSNPSAEMPSFGNLTVPVSVSNGVPYSFSGSVNLLKNSPISSGGVDILGSLVNEGLQSQDSFGMWVNKIPDTACSIDESVLESSIPSVHEPYSSLVADSQQSSLPEQVFNLTEVSPAWASSTEKTKVLVTGYFHNNYQHLAKSNLLCVCGDVSVPVEIVQVGVYRCWVSPHSPGLVNLYLSFDGHKPISQVVNFEYRTPILHDPTALMEEKFNWNEFRLQMRLAQLLFSTDKSLNIFSSKVSHNALKEAKKFSIKTSFISKSWQFLMKSIDDKTIPFSQVKDALFEIALKNKLKEWLLERIILGGKTTEYDAEGQGVIHLCAMLGYNWAISLFSWSGFSLDFRDKFGWTALHWAAYHGMEKMVATLLSSGARPNLVTDPTPQYPGGYTAADLACMKGCEGLAAYLSEKSLVGQFNDMSLAGNISGSLETSSTDPVNPENFTEDQLYIKDTLEAYRTAAEAAARIQAAFREHSFKLRYQEVEIITPEEEARQIVAAMRIQHAFRNYETKKRITAAARIQVRFRTWKYRREFLHMRRQAIKIQAAFRGFQARKQYRKIIWSVGVLEKVILRWLLKRKGFRGLQVKPDEDEQQESDTVVEENFFRTGRKQAEERVESPGII 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0645 870 SUPERFAMILY E set domains 362 449 IPR014756 -
Aed4g0645 870 Pfam CG-1 domain 33 146 IPR005559 GO:0003677
Aed4g0645 870 Pfam Ankyrin repeats (3 copies) 540 627 IPR002110 GO:0005515
Aed4g0645 870 ProSiteProfiles IQ motif profile. 709 738 IPR000048 GO:0005515
Aed4g0645 870 ProSiteProfiles IQ motif profile. 785 809 IPR000048 GO:0005515
Aed4g0645 870 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 16 866 - -
Aed4g0645 870 Pfam IQ calmodulin-binding motif 787 806 IPR000048 GO:0005515
Aed4g0645 870 ProSiteProfiles CG-1 DNA-binding domain profile. 27 153 IPR005559 GO:0003677
Aed4g0645 870 SMART ANK_2a 637 668 IPR002110 GO:0005515
Aed4g0645 870 SMART ANK_2a 598 627 IPR002110 GO:0005515
Aed4g0645 870 Gene3D Immunoglobulins 357 452 IPR013783 -
Aed4g0645 870 ProSiteProfiles IQ motif profile. 762 791 IPR000048 GO:0005515
Aed4g0645 870 Gene3D - 526 665 IPR036770 -
Aed4g0645 870 SUPERFAMILY Ankyrin repeat 542 660 IPR036770 -
Aed4g0645 870 ProSiteProfiles Ankyrin repeat region circular profile. 598 626 - -
Aed4g0645 870 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 695 812 IPR027417 -
Aed4g0645 870 Gene3D - 761 809 - -
Aed4g0645 870 SMART iq_5 784 806 IPR000048 GO:0005515
Aed4g0645 870 SMART iq_5 761 783 IPR000048 GO:0005515
Aed4g0645 870 SMART iq_5 708 730 IPR000048 GO:0005515
Aed4g0645 870 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 16 866 - -
Aed4g0645 870 ProSiteProfiles Ankyrin repeat profile. 598 630 IPR002110 GO:0005515
Aed4g0645 870 SMART CG_1_2 31 148 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0645 Aed-Chr4 5483533 5492901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0645 31 865 CAMTA Transcription Factor Family AT3G16940 54.524 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Aed4g0645 Ank_2 2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0645 K21596 - gmx:100776839 1484.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0645 4 5483533 5492901 Aed4g0645 4 5483533 5492901 ECH
Aed6g2332 6 25201657 25209339 Aed4g0645 4 5483533 5492901 PCT