Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0620 ATGATCGTGAGCCAGAACATGGCGACGGAAGCGGAAATTATCTGCAAGCAGAGCATTCCGATGTTGGACGTGAAGTACCATCTTCGCGTGGCGCAGGAACACGGCGTTAAGGTCGAGGTTTCGCCCACCTCTAACGCTGTTCCAATCTTCGGCCACGTGCGGGTTTCTGCTGAATCGGTTTCCACTGAAACGACTCGTTTTGAATCGGTTGTGAGTTGCCCCGAGATGATTGAAGAATCCATTTTAGAGACTCCTGCTACCAAATTTATACCAAATGTTCGATCTGCTTGCTGTGCTGATATTGGACCAAGGGGGTCTATGGATGATGAGCATATTCAGATAGATGATCTAGCAGCTCACCTTGGATTTGAGTTCAAGCAGCCTACACCGAGTGCATTTTATGCAGTTTTTGATGGGCATGGAGGGCCTGATGCAGCTGCCTTTGTGAAGAACAATGCTATGAGATTATTTTTTGAGGATGCTGATATGCTGCAATCATATGATGCCGATGCACTTTTCCTGAAGAAGTTGGAAGATTCTCACCGGAGAGCGTTCTTAGGTGCTGATCTTGCCTTGGCTGATGAGCGAAGTGTTAGTAGTTCCTGTGGAACAACGGCCTTGACTGCCCTTTTACTCGGAAGGCATTTGATGGTTGCTAATGCTGGCGACTGTCGAGCTGTTATTTGTAGGCGAGGAGTAGCTGTTGATATGTCCCAAGATCACAGACCAAGTTATTTACCAGAACGCAGGAGAGTGGAGGAGTTAGGTGGTTTCATTGATGATGGATATCTTAATGGTTATCTTTCGGTGACTCGTGCCCTTGGAGATTGGGACTTTAAATTTCCACTTGGTTCTGCATCACCTCTTATTGCTGAGCCGGAGGTTCAGGTGGTCACATTGACAGAGGACGATGAGTTCCTGATCATTGGGTGTGATGGTATTTGGGATGTAATGTCAAGTCAGGATGCCATTAGTTTTGTGCGGCGTGGGTTAAGAAGGCATGATGATCCTCAACAATGTGCCAGAGAGCTTGTAAAGGAAGCATTGCGCCTACACACATCAGATAATCTTACTGTGATTGTTATCTGCTTGTCCCCTGTCCAAAGCATTGCCATATCATGTCCATCCCAGAGGAGAAGATTCAGAGCTTGTTCTCTGTCTGAAGAGGCCCAGAGCAGATTGAGGAGCTTGCTAGAGGGAAACTGA 1206 0.4701 MIVSQNMATEAEIICKQSIPMLDVKYHLRVAQEHGVKVEVSPTSNAVPIFGHVRVSAESVSTETTRFESVVSCPEMIEESILETPATKFIPNVRSACCADIGPRGSMDDEHIQIDDLAAHLGFEFKQPTPSAFYAVFDGHGGPDAAAFVKNNAMRLFFEDADMLQSYDADALFLKKLEDSHRRAFLGADLALADERSVSSSCGTTALTALLLGRHLMVANAGDCRAVICRRGVAVDMSQDHRPSYLPERRRVEELGGFIDDGYLNGYLSVTRALGDWDFKFPLGSASPLIAEPEVQVVTLTEDDEFLIIGCDGIWDVMSSQDAISFVRRGLRRHDDPQQCARELVKEALRLHTSDNLTVIVICLSPVQSIAISCPSQRRRFRACSLSEEAQSRLRSLLEGN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0620 401 SUPERFAMILY PP2C-like 88 366 IPR036457 -
Aed4g0620 401 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 7 388 - -
Aed4g0620 401 ProSiteProfiles PPM-type phosphatase domain profile. 94 364 IPR001932 -
Aed4g0620 401 ProSitePatterns PPM-type phosphatase domain signature. 133 141 IPR000222 GO:0043169
Aed4g0620 401 Gene3D - 81 368 IPR036457 -
Aed4g0620 401 Pfam Protein phosphatase 2C 104 356 IPR001932 -
Aed4g0620 401 PANTHER PROTEIN PHOSPHATASE 2C 7 388 IPR015655 GO:0004722|GO:0006470
Aed4g0620 401 SMART PP2C_4 84 362 IPR001932 -
Aed4g0620 401 SMART PP2C_SIG_2 109 364 IPR001932 -
Aed4g0620 401 CDD PP2Cc 93 364 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0620 Aed-Chr4 5280069 5282874 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0620 1 400 PP2C-type Phosphatase Gene Family AT1G48040 57.353 1.91e-147 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0620 K14803 - gmx:100798957 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed4g0620 4 5280069 5282874 Aed4g0620 4 5280069 5282874 ECH