Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0588 ATGGATGCCAATCAATCACAAGAGCATTCCAAGTCAAGATCATCGTCATCCTCTTGTTGGGCTTGCAAGTATGCAAGGAGGAAATGCGACAATGAGTGCATCTTTGCACCTCTCTTTGCTTCGGACGAAAGCTCAGCACGGTTTGTAGTAGTGCACAAGGTTTTTGGAAGGAGCAATTTGTCAAAGTTGTTGAAAAATGTTGAAGAGGTTCGTCGCCAAGAGGTGATTGATTCCTTGTACTATGAGACTCAGGCAAGGTTGGCTGATCCAATTAACAATTGTGCCTCCACTCTCATTGCTTTGCAACAACAACAGACCTTCTTTAAGAGAACACAACAACAACCATCAAACATTGATGTAGCTATGCAGCCAGCATACTCCATCAATGCACCAGCTGATTCCAGCAACTTGATGAATATGAGCTCTTTCATTCCTGGTTTTGATGACCTTGCAACAATGACAGCATTCCCAACACAAAGCTTGGAGCCTCTTCAATTCCCTGAGCTTGAGGAAGAAGCTAGAATATTCCCTTAG 534 0.4345 MDANQSQEHSKSRSSSSSCWACKYARRKCDNECIFAPLFASDESSARFVVVHKVFGRSNLSKLLKNVEEVRRQEVIDSLYYETQARLADPINNCASTLIALQQQQTFFKRTQQQPSNIDVAMQPAYSINAPADSSNLMNMSSFIPGFDDLATMTAFPTQSLEPLQFPELEEEARIFP 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0588 177 ProSiteProfiles LOB domain profile. 17 119 IPR004883 -
Aed4g0588 177 Pfam Lateral organ boundaries (LOB) domain 18 110 IPR004883 -
Aed4g0588 177 PANTHER LOB DOMAIN-CONTAINING PROTEIN 20 5 104 - -
Aed4g0588 177 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0588 Aed-Chr4 4979845 4980844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0588 17 122 AS2 family AT3G03760 51.818 1.65e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed4g0588 LOB 4.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0588 - - pvu:PHAVU_001G115200g 139.428