Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0578 ATGGCAGAAGAGGATTCAAAGCCTTTGAACTACATCCCCGAGGTCATACTCAAGAAGAGGAAACACACCGAAGCATGGGCGTTGCGGAAAAAAGATCAGTTCCAGCAGAAAAAATACCAATCCATCAAGAAGCCCGAAGATTTCATCCACGAGTATCGCAACAGGGAGGTGGACCTTCTAAGAATGAAGCGGAGGGTGAAGAGGAAAGTGCCTGAAGCTAACTCCAACACTTTGATAATTATTCGGATACAGGGGTGGGTAAAGAAAAAGGACATGCATCCGAGGACGAAGAAGGTATTGTACAGCTTGGGGTTGAGGAAAGTGTTCAGTGCTGTGTTTGTGAAGCCGAGTGAGGGAGTAATGGCCAAGCTGCAGAGGGTGGAGCCATATGTGACCTATGGATATCCAAATCTTAAAACCATAAAGGATCTAATTTACAAAAAAGGACAAGCAAGGTTGGAAAAGCGAAAAGCTCCCTTGACGGATAATAACATTATTGAGCAGGAATTAGGGAAGTTTGGTATTGTATGCATAGAAGACATGGTTCATCAGATTTCTAATGCTGGTCCACACTTTAAGGAAGTTGTCAGTTTTATGTGGCCTTTTGAGCTCAACAAGCCAGCTGAAGGATTGAAAGGATCAAAAACCATATTCAAGGAAGGTGGAGACGCAGGGAACCGGGACGATCTCATCAATGAACTAATCAATAAAATGAATTAA 720 0.4319 MAEEDSKPLNYIPEVILKKRKHTEAWALRKKDQFQQKKYQSIKKPEDFIHEYRNREVDLLRMKRRVKRKVPEANSNTLIIIRIQGWVKKKDMHPRTKKVLYSLGLRKVFSAVFVKPSEGVMAKLQRVEPYVTYGYPNLKTIKDLIYKKGQARLEKRKAPLTDNNIIEQELGKFGIVCIEDMVHQISNAGPHFKEVVSFMWPFELNKPAEGLKGSKTIFKEGGDAGNRDDLINELINKMN 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0578 239 Gene3D - 77 239 IPR036919 -
Aed4g0578 239 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 239 - -
Aed4g0578 239 PANTHER 60S RIBOSOMAL PROTEIN L7 3 239 IPR039699 -
Aed4g0578 239 CDD Ribosomal_L7_archeal_euk 78 239 IPR035808 -
Aed4g0578 239 SUPERFAMILY Ribosomal protein L30p/L7e 79 239 IPR036919 -
Aed4g0578 239 Pfam Ribosomal protein L30p/L7e 78 131 IPR016082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0578 Aed-Chr4 4866187 4869006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0578 1 239 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 52.800 8.57e-86 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0578 K02937 - gmx:100306107 432.18