Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0569 ATGGTGTACTGTAGTCACTGTGCCAAAAATGTCGCTGGCGAGCGACTAGATGATGGTTTCTTATGTTGTGGAGGCTGTGGGAGGGTGTTGGAAGATTACTTTTTTGCTGAGGAGCCTGTATTTGCTAAGAATGCAGCTGGGCAGAGTAAATTATCAGGCAATTATGTAAGAACAGTTCAAAGCGACTTCTCTGAATCACGTCAAAGGACTTTAAATAGAGCTCATGATGAAATTAAATATTTAAGTTTTGGTCTTGGAGTTAATGATGAAAATATGGCTTCACAAGCTTTGACCTTTTATAAAATAGCGCTTGAGCGAAATTTCACCCGTGGACGTAAATCAGAACAAGTACATGCTGCTTGTCTCTATATTGCATTCCGGCACAACAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAGATGTTTATGTGCTAGGAGCAGTTTTCTTGCAGCTTTGTCAAGTGTTAAGGCTTGGAGAGCACCCAATTGTTCAAAAGCCTGTTGATCCTAGTCTTTTTATTCATAGATATACCAAGAATTTGTTAAAGCGTGGGAGTAAGGCTGTCTCTGATACTGCACTGGCCATTGTTGCAAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAACCTAGCGGATTATGTGGTGCAGCATTATACATATCTGCTCTTGCTCATGGTATCAAGTGCTCTAAGCCGGATATTCTTAGAATTGTCCATGTATGTGAAGCAACATTGACCAAACGATTGGTAGAATTTGAGAATACAGAGTCTTCTAGCTTGACAGTTGAGGAGTTGAATACAATGGCAAAAGAGCATGAAAAAAATCCAATGCTAATGCCAGAAGGTGGATTAAAAGGATGTATTTCAAAAGATCTTCTGTGTGAGCACAAGAATGATAGTGGGGTGACCCATTTTGCACTTGGATTATGTGAAGCATGCTATAGGGATTTTGATAAGCTCTCTGGTGGACTTGGGGGTGGTTTGGATCCTCCTGCGTTCCAGCGTGCTGAGAGGGAAAGAGCTAAAAAAACACTCCTCGAGGAGAGTGTCGATGAAGCTTGTGCTATGGAAAATGCATCAAATGATCAGTTTAAGAGCCACAAAGAAGATTTGCCTGGCTATGTGCCAGAAAGTATTGGGGCTAATGTTGAGCATGAGGCCTCTAAAGATGGTAAATATGATGATTCACATGGAGAAGGTGAATCAGAAACTTTATCTGATATTGATGATGAAGACGTTGATTTGTACATTCATGATGAGGAGGGGATGCATATCAAGAAGATACTATGGGAAACAGCGAATCGGGAGTATCTTGAGGAGCAGGCAGCCAAAGAAGCAGCTGCAGCAGCTAATAAGAAAGCTTTTGAGGCAAATTTTGAAAACTGTTCAGAGGATTTACTAGCGGCAAGAGAGCTTGCTGCATCTTCTGCTGCAGCTGAAATGAAACAGAGACGAGCCTTTGAGGCAAAAAATACAAGGCCAGCTCAATCTGCTGCAGAGGCCTTTGGCCAAATGTCTAACAAAAAAGGGTATTTATTCAACAAGAGACGTGCATTTTCTTTAGACATTCTTAATTTGCAGGGTCTCAAATCTAAAGTCAATTTTGATCGCCTGAGTGAATTATTTGATGAACTGGAAAAGACTGATGATATCAAGAAACAGAAGAAAGTAGAATTTGATCCGTCCAAGATTCAGAACAAAAATGAAGATGAGACGGGGTCAGCGGATGAATTTGGAGATGAAGGGGATGTGGGGCAGATGTATCAAAATGGGTTGTCTACTGAAAATATGGCTGATAAATATTTCCCTGACGATGATGGTTTGGGCTATAATGACTATGATGATTATTACTGA 1869 0.4056 MVYCSHCAKNVAGERLDDGFLCCGGCGRVLEDYFFAEEPVFAKNAAGQSKLSGNYVRTVQSDFSESRQRTLNRAHDEIKYLSFGLGVNDENMASQALTFYKIALERNFTRGRKSEQVHAACLYIAFRHNNKPYLLIDFSNYLRTDVYVLGAVFLQLCQVLRLGEHPIVQKPVDPSLFIHRYTKNLLKRGSKAVSDTALAIVASMKRDWMQTGRKPSGLCGAALYISALAHGIKCSKPDILRIVHVCEATLTKRLVEFENTESSSLTVEELNTMAKEHEKNPMLMPEGGLKGCISKDLLCEHKNDSGVTHFALGLCEACYRDFDKLSGGLGGGLDPPAFQRAERERAKKTLLEESVDEACAMENASNDQFKSHKEDLPGYVPESIGANVEHEASKDGKYDDSHGEGESETLSDIDDEDVDLYIHDEEGMHIKKILWETANREYLEEQAAKEAAAAANKKAFEANFENCSEDLLAARELAASSAAAEMKQRRAFEAKNTRPAQSAAEAFGQMSNKKGYLFNKRRAFSLDILNLQGLKSKVNFDRLSELFDELEKTDDIKKQKKVEFDPSKIQNKNEDETGSADEFGDEGDVGQMYQNGLSTENMADKYFPDDDGLGYNDYDDYY 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0569 622 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Aed4g0569 622 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Aed4g0569 622 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Aed4g0569 622 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 1 521 IPR000812 GO:0006352|GO:0070897
Aed4g0569 622 SUPERFAMILY Cyclin-like 172 265 IPR036915 -
Aed4g0569 622 SMART cyclin_7 69 158 IPR013763 -
Aed4g0569 622 SMART cyclin_7 176 259 IPR013763 -
Aed4g0569 622 Gene3D Single helix bin 404 453 - -
Aed4g0569 622 MobiDBLite consensus disorder prediction 390 414 - -
Aed4g0569 622 Pfam Transcription factor TFIIB repeat 68 156 IPR013150 GO:0017025
Aed4g0569 622 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Aed4g0569 622 CDD CYCLIN 96 143 IPR013763 -
Aed4g0569 622 CDD CYCLIN 173 248 IPR013763 -
Aed4g0569 622 PANTHER TRANSCRIPTION FACTOR IIIB 90 KDA SUBUNIT 1 521 IPR029529 GO:0000126|GO:0000995|GO:0006383
Aed4g0569 622 Pfam Brf1-like TBP-binding domain 411 518 IPR011665 -
Aed4g0569 622 Gene3D - 173 264 - -
Aed4g0569 622 MobiDBLite consensus disorder prediction 390 408 - -
Aed4g0569 622 SUPERFAMILY Cyclin-like 75 162 IPR036915 -
Aed4g0569 622 Gene3D - 63 164 - -
Aed4g0569 622 MobiDBLite consensus disorder prediction 565 622 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0569 Aed-Chr4 4763109 4777881 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0569 1 519 Inorganic Solute Cotransporters AT2G01280 39.630 3.81e-103 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0569 K15196 - gmx:100817609 1012.68