Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed4g0561 ATGACTTCCTCACAGAACTTCAACAATGTTGTTGGTGAAGGTTTCAGCGGAGACATGAGTTTCTTCCCTTTGTCCATGGGTTCAAAAGACCCTGAGAGGAGTGTTAGTCTTCAGATTTTTGGCACCCCAGCGTTGTTTCAGTCTCAGGAGTCCAGGGGAACAAAGAGAACCAGTGATGAAGAAGGGGTTGAGAATGAGAACAAAAGCTTGTGTTTGAGACTCGGTGATGAAGCAGAAGCTAAAAACTCTGATTCAGGAAAAACCAAGCTTTGTGCTAGAGGACACTGGAGGCCAGCTGAAGATGAAAAACTGAAGGAGCTTGTAGCCCAATATGGCCCTCAAAACTGGAACTTGATTGCCGAGCATCTAGAAGGAAGATCAGGAAAAAGTTGTAGATTGAGGTGGTTCAACCAGCTAGATCCTAGGATAAACAGAAGGTCCTTTTCTGAGGAGGAAGAGGAGAGGCTTTTGACTGCACACAGAATGTATGGCAACAAATGGGCCATGATTGCAAGGCTCTTCCCTGGAAGGACAGATAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAGAGGGAGCAGCACTCTAGTGGTAGTGTGTATAGAAGGAGAAAACCGGTTCTGGTGAATGGTGAACCGCTTCTTCCAAAGGGTTTGAACCTCACTCTGTCTCAGTCTAACAATAATGCAGGGACGAGTACTGAGTCAACAACCATCTCAAGCACCATTGATGAGTCTGCTGCCTCAACTTGCACAAACCTCTCCCTCACACCCTCTTCTGCCAAACAAGCAACAACTCCTTTTGGAGGAAGAAGAGGACTCTTTGACCAAACTGCTCCATCTCAGAATCCCCACCAACCCTTAATTGGATCATTTATTGGACAAGGTAGAGGAGAAAATGTGATGAGTTTGAACAAGTTTTATGGTGGTGTAGCGTATAACAAGGCTGAAGAAGTGGGAAAACAGGTGAAGAAGGGTGTGGACCAGTCTAATTTTTCAGATGCGAATTCAGAAGTATCAGTATCTGAGTCAGTTGCCACCAATAGGTCCAATGTCTCAATTTCTGAGGAGAGTGAAACTGATAAGAAGATTAGCAACAGCAACATGATGCCATTCATTGATTTTCTTGGAGTAGGAGCTACATAG 1155 0.4494 MTSSQNFNNVVGEGFSGDMSFFPLSMGSKDPERSVSLQIFGTPALFQSQESRGTKRTSDEEGVENENKSLCLRLGDEAEAKNSDSGKTKLCARGHWRPAEDEKLKELVAQYGPQNWNLIAEHLEGRSGKSCRLRWFNQLDPRINRRSFSEEEEERLLTAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARRQREQHSSGSVYRRRKPVLVNGEPLLPKGLNLTLSQSNNNAGTSTESTTISSTIDESAASTCTNLSLTPSSAKQATTPFGGRRGLFDQTAPSQNPHQPLIGSFIGQGRGENVMSLNKFYGGVAYNKAEEVGKQVKKGVDQSNFSDANSEVSVSESVATNRSNVSISEESETDKKISNSNMMPFIDFLGVGAT 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed4g0561 384 MobiDBLite consensus disorder prediction 335 357 - -
Aed4g0561 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 93 139 IPR017930 -
Aed4g0561 384 MobiDBLite consensus disorder prediction 46 69 - -
Aed4g0561 384 Pfam Myb-like DNA-binding domain 96 156 - -
Aed4g0561 384 SMART sant 92 141 IPR001005 -
Aed4g0561 384 SMART sant 144 192 IPR001005 -
Aed4g0561 384 PANTHER MYB PROTEIN-RELATED 51 384 - -
Aed4g0561 384 CDD SANT 96 137 IPR001005 -
Aed4g0561 384 ProSiteProfiles Myb-like domain profile. 140 190 IPR001005 -
Aed4g0561 384 CDD SANT 156 187 IPR001005 -
Aed4g0561 384 Gene3D - 93 144 - -
Aed4g0561 384 PANTHER OS08G0435700 PROTEIN 51 384 - -
Aed4g0561 384 SUPERFAMILY Homeodomain-like 93 186 IPR009057 -
Aed4g0561 384 MobiDBLite consensus disorder prediction 335 366 - -
Aed4g0561 384 ProSiteProfiles Myb-like domain profile. 93 139 IPR001005 -
Aed4g0561 384 MobiDBLite consensus disorder prediction 53 69 - -
Aed4g0561 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 194 IPR017930 -
Aed4g0561 384 Gene3D - 147 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed4g0561 Aed-Chr4 4663395 4666663 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed4g0561 74 218 MYB Transcription Factor Family AT1G69560 69.935 1.69e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed4g0561 Myb_DNA-bind_6 2.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed4g0561 K09422 - gmx:100791795 466.848